| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1532 |
|---|
| Symbol | |
|---|
| ID | 7173443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1889088 |
|---|
| End bp | 1890305 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643540046 |
|---|
| Product | carboxynorspermidine decarboxylase |
|---|
| Protein accession | YP_002435948 |
|---|
| Protein GI | 218886627 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACC AAGCCTATCT CGCCAAGCTC GACCCCACCC GCTTTCCGTC CCCGTGCTTC
GTGGTGGACG AGGCGCGCAT CGAGGCCAAC GCCGCCATCC TGGACACGGT GCAGCGTCGC
ACCGGGGCCA GGGTGCTGCT GGCGCTGAAG GGCTTTGCCA TGTGGAGCCT GTTTCCGCTG
CTGTCGCGCG CGCACGGCGG GGTGCTGCAT GGCACCTGCG CCAGTTCCCC GCACGAGGCG
CGGCTGGGCC GCGAGGAATT CGGGGGCGAG GTGCACGCCT TTGCCGCCGG ATACAGCGAT
GCGGACATGG CCGAACTGGT GACCCTGGCC GACCATCTGG TGTTCAACTC GTTCGCGCAG
TGGAGCAGGT TCCGTCCGGC GGTGGCGGCG GCGGGGCGGC CCATCGAGTG CGGCATCCGC
ATCAATCCGG AGCACTCGGA AGGAGCCGTG GCCATCTACA ACCCGTGTTC GCCCGGTTCC
CGTCTGGGGG TGCGTCCCCA TCACTTCGAG GCCGCACTGG CAGAGGCGGC GGCGCGCGGA
GAAGACGCGC TGGACGGCAT CTCCGGCCTG CATTTCCACA CCCTGTGCGA GCAGGACGCC
GACGCGCTGG ACCGCACCCT GCACGCGGTG GAGGCAAGGT TCGGCGCGCA TCTTTCGCGC
ATGAAGTGGC TGAACTTCGG CGGCGGGCAC CACGTCACCC GTCCCGGCTA CGACCTTGAC
CTGCTGTGCC GGTGCATCGA CCGCATGCAG CAGAAGTACG GGGTGCAGGT GTACATCGAG
CCGGGCGAGG CCGTGGCCCT GAACGCCGGG GTGCTGCTGT GCACCGTGCT GGACGTGGTG
CAGGCCGACA TGCCCATCGC CATCCTGGAT ACCTCCGCCG CCGCGCACAT GCCCGACGTA
CTGGAAATGC CCTACCGCCC CGGTTGCATC GGCTCCGGCC TGCCGGGCGA AAGGGCGTGG
ACCTGCCGCT TCGCGGGCAA GTCGTGCCTG GCGGGCGACG TCATCGGCGA ATACTCCTTC
GACGCCCCCC TGCAACCCGG CGACCGGCTG GCCTTCCTGG ACATGGCCAT CTACAGCATG
GTCAAGACCA CCACCTTCAA CGGGCTGCAA CTGCCCGCCA TCGCCCGCTA CCGGCCCGCC
GGTGCGGACG GACGGGCCGC GCGGCGCGAG GTGGTGCGGT CCTTCGGGTA CGAGGCGTTC
AAGTACCGCC TGTCCTGA
|
|---|
| Protein sequence | MMDQAYLAKL DPTRFPSPCF VVDEARIEAN AAILDTVQRR TGARVLLALK GFAMWSLFPL
LSRAHGGVLH GTCASSPHEA RLGREEFGGE VHAFAAGYSD ADMAELVTLA DHLVFNSFAQ
WSRFRPAVAA AGRPIECGIR INPEHSEGAV AIYNPCSPGS RLGVRPHHFE AALAEAAARG
EDALDGISGL HFHTLCEQDA DALDRTLHAV EARFGAHLSR MKWLNFGGGH HVTRPGYDLD
LLCRCIDRMQ QKYGVQVYIE PGEAVALNAG VLLCTVLDVV QADMPIAILD TSAAAHMPDV
LEMPYRPGCI GSGLPGERAW TCRFAGKSCL AGDVIGEYSF DAPLQPGDRL AFLDMAIYSM
VKTTTFNGLQ LPAIARYRPA GADGRAARRE VVRSFGYEAF KYRLS
|
|---|
| |