Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_1530 |
Symbol | |
ID | 7173441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 1885562 |
End bp | 1888252 |
Gene Length | 2691 bp |
Protein Length | 896 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643540044 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002435946 |
Protein GI | 218886625 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 80 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGGCG ATATGCCACA GCACATGCGG GACGAGGAAC AGGAACACCG TGCCGCCGGG GGGCCAGCGA ACGCGGAAAA CCCCGGACAA AATGCGCCCG GACAAGGTGC CCCCGGACAA AACACATCCG GCAGCCAGAC GCCCGGCCTG CTGCGCGCCC TGCTGGACAA CCCCCTGGTG GCGCTGTTCC TGCGCGACGG CGAGGGGCGC TATCTGGCCG CCAACCACCT GTATGCCGAC CTGGCCGGCG TGCCCGGCAA GGACGTGGTG GGGCTTTCCC CGCGCGACAT CTTTCCCCAC GCCGTGGCCA GCGCCCTGCT GGACGAGGAC CGGCGCGTGG CCGAAGACAG CACCCCCCTG CTGTGCGAGC GCATGCTGCC CGCCGACGAG GCCGAGCGGG TGTTCCGCGT GGCCAAGCTG CCCCTGCCTC CCGAGGTGGC CGGACCAGGC GCCGTGCTGG GCCTGGCCTT CGACGTCACC GCCCTGGTCG AGGCCGAAAT AGAAGAAGAG GTGCGCCAGC GCACCGCCGC ACTGGCCGAA AGCACGGCCC GCTTCCGTGC GCTGTTCGAA CTGGCCCCGG ACGCCGTGTA CGTGCGCGGC GAGGGGGGCC GCATCGTGGA CTGCAACCGC GCCGCCGAAC GCATGTCCGG CCACCCGCGC GAAACGCTGC TGTCCCTGCG CACGGCAGAC CTGCTGCCGC CGGACATCGA GGTCCGCATC GACAATCTGC TGACCGGGTG CCCCCTGCCT GTCGCCACCC ATCCAGACTC CACCCCGGCT GAACCGCGCC AGGGCACGGA CGGCGCCAAC CCCGGCAGCG GCTTCTGCCC CACCGGCGGC TTCTGCATGG AAGGGATCTG CACCGCCGCG CACGGCCCTC ACGAGGCCGA GGTGAGCGTG GAGCCCCTGC CCCTGTCCCT GCTGCGGGGC AAGGGCATGA CCGCGCTGGT GGTGGTGCAC GACATTTCCG GACGCCGCAC CGCCGAACGC CAGGCCCGGC TGTTCGAACG GGTGTTCCGC AACGCGCTGG AAGGCATCTG CATCACCGAC CCGGAAGGGA TCATCGTCGC GGTGAACCCG GCCTTCACCA CCATCACCGG ATACCCGGCG GACGACGCCG TGGGCCAGAG CCCGCGCCTC CTGAAATCGC ACCATCACGA CAGCGCCTTC TACGAAGACA TGTGGCGCGC GCTGGTGGAG GAAGGCCGCT GGGAAGACGA GATATGGAAC CGCCGCAGGA ACGGCGAAGT GTACCCCGAA TGGCTGAGCA TCAGCGCCAT TCCCGGCCCC ACCGGACGCA CCGAGTACTA CGTGGCCGTG TTTCACGACA TCACGGAGCT GAAGGCCAAG GAATCGCAGA TCCAGCACCA GGCCCACCAC GACGCGCTCA CCGGCCTGCC CAACCGCGCC CTGCTGCGCG ACCGGCTGGG CATGGCCATC AACGGCGCCC GGCGCGAGGA CCGCAAGGTG GCCGTGCTGT CGGTGGACCT GGACAACTTC AAGCAGGTCA ACGACAGCCT GGGCCACATG GTGGGCGACA TCTACCTGCA ACAGGCCGCC GAGCAGATGC GCCAGATGGT GCGCCCGCAG GACACCCTGG CCCGCGTGGG CGGCGACGAA TTCGTGGTGG TGCTGCAAGA CGTGGAGGGC GAACGCGACG CGGCGCAGGT GGCCGAACGA CTGCTGGCCC GGTTCACCGA CCCGGTGCGG GTGCAGGAAC ATGAGCTGTT CGTGGGCGCC AGCGTGGGCA TCGCCCTGTT TCCCGACGAC GGCGACGACC CCGACACCCT GGTGCGCAAC GCCGACATCG CCATGTCGCG CGCCAAGGAA CAGGGCAAGC GCCGCTACCA CCTGTTCACC CCGGCCATGA ACGACCGCGC CGTGCGCCGC CTGTCGCTGG AAGGCGACCT GCACCGCGCC CTGGCCGCCG GAGACATCAC CGCCCACTAC CAGCCGCGCG TGGACCTGAA CACCGGCCTG ATCACCGGCA TGGAGGCCCT GGCCCGCTGG ATCCGCGCCG ACGGCAGCCA GGAGCACCCG GCGGAGTTCA TCCCCCTGGC CGAATCCACG GGGCTCATCG TGCCCCTTGG CGAACACATG CTGCGCCTGG CCTGCGCGAA AACCCGCGCC CTGTGCGATG CAGGACACGC CGACCTGCAC GTGGCCGTGA ACCTTTCGGT GCACCAGTTC CGCCACCGCA ACCTGGTGGG CATGGTGGCC GACGTGCTGG CCGAAACGGG CCTGCCGCCG CACCTGCTGG AACTGGAGAT CACCGAATCC ACCATCGTCA CCGACGTGGA CCATACCATC CGCAAGCTGA ACCAGCTCGC GGAAATGGGC ATCGCCCTTT CGGTGGACGA CTTCGGCACC GGGTATTCCT CGCTGTACCA GCTCAAGAAC CTGCCGCTGA CCTCGCTGAA GATCGACCGT TCGTTCATCC GCGACATCCC CGACGACCCC AACGACGCGG CCATCGCCGC CACCATCATC ACCATGGCCG ACCGGCTGGG GTTGCGCGTA GTGGCCGAAG GGGTGGAAAC GCCGGAACAG CTCAACTTCC TGCTGCTGGA AGGCTGCCAC GAGGTACAGG GATTCCTGTT CAGCCGCCCC CTGCCGCCGG ACGAGTTCAC CGCTCTGCTG GCACGGGGCA GACTGCTGAC CGTGCCCCGC GATGGAGACG GCGGCATCTG A
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Protein sequence | MTGDMPQHMR DEEQEHRAAG GPANAENPGQ NAPGQGAPGQ NTSGSQTPGL LRALLDNPLV ALFLRDGEGR YLAANHLYAD LAGVPGKDVV GLSPRDIFPH AVASALLDED RRVAEDSTPL LCERMLPADE AERVFRVAKL PLPPEVAGPG AVLGLAFDVT ALVEAEIEEE VRQRTAALAE STARFRALFE LAPDAVYVRG EGGRIVDCNR AAERMSGHPR ETLLSLRTAD LLPPDIEVRI DNLLTGCPLP VATHPDSTPA EPRQGTDGAN PGSGFCPTGG FCMEGICTAA HGPHEAEVSV EPLPLSLLRG KGMTALVVVH DISGRRTAER QARLFERVFR NALEGICITD PEGIIVAVNP AFTTITGYPA DDAVGQSPRL LKSHHHDSAF YEDMWRALVE EGRWEDEIWN RRRNGEVYPE WLSISAIPGP TGRTEYYVAV FHDITELKAK ESQIQHQAHH DALTGLPNRA LLRDRLGMAI NGARREDRKV AVLSVDLDNF KQVNDSLGHM VGDIYLQQAA EQMRQMVRPQ DTLARVGGDE FVVVLQDVEG ERDAAQVAER LLARFTDPVR VQEHELFVGA SVGIALFPDD GDDPDTLVRN ADIAMSRAKE QGKRRYHLFT PAMNDRAVRR LSLEGDLHRA LAAGDITAHY QPRVDLNTGL ITGMEALARW IRADGSQEHP AEFIPLAEST GLIVPLGEHM LRLACAKTRA LCDAGHADLH VAVNLSVHQF RHRNLVGMVA DVLAETGLPP HLLELEITES TIVTDVDHTI RKLNQLAEMG IALSVDDFGT GYSSLYQLKN LPLTSLKIDR SFIRDIPDDP NDAAIAATII TMADRLGLRV VAEGVETPEQ LNFLLLEGCH EVQGFLFSRP LPPDEFTALL ARGRLLTVPR DGDGGI
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