| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1530 |
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| Symbol | |
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| ID | 7173441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 1885562 |
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| End bp | 1888252 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643540044 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002435946 |
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| Protein GI | 218886625 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 80 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGGCG ATATGCCACA GCACATGCGG GACGAGGAAC AGGAACACCG TGCCGCCGGG
GGGCCAGCGA ACGCGGAAAA CCCCGGACAA AATGCGCCCG GACAAGGTGC CCCCGGACAA
AACACATCCG GCAGCCAGAC GCCCGGCCTG CTGCGCGCCC TGCTGGACAA CCCCCTGGTG
GCGCTGTTCC TGCGCGACGG CGAGGGGCGC TATCTGGCCG CCAACCACCT GTATGCCGAC
CTGGCCGGCG TGCCCGGCAA GGACGTGGTG GGGCTTTCCC CGCGCGACAT CTTTCCCCAC
GCCGTGGCCA GCGCCCTGCT GGACGAGGAC CGGCGCGTGG CCGAAGACAG CACCCCCCTG
CTGTGCGAGC GCATGCTGCC CGCCGACGAG GCCGAGCGGG TGTTCCGCGT GGCCAAGCTG
CCCCTGCCTC CCGAGGTGGC CGGACCAGGC GCCGTGCTGG GCCTGGCCTT CGACGTCACC
GCCCTGGTCG AGGCCGAAAT AGAAGAAGAG GTGCGCCAGC GCACCGCCGC ACTGGCCGAA
AGCACGGCCC GCTTCCGTGC GCTGTTCGAA CTGGCCCCGG ACGCCGTGTA CGTGCGCGGC
GAGGGGGGCC GCATCGTGGA CTGCAACCGC GCCGCCGAAC GCATGTCCGG CCACCCGCGC
GAAACGCTGC TGTCCCTGCG CACGGCAGAC CTGCTGCCGC CGGACATCGA GGTCCGCATC
GACAATCTGC TGACCGGGTG CCCCCTGCCT GTCGCCACCC ATCCAGACTC CACCCCGGCT
GAACCGCGCC AGGGCACGGA CGGCGCCAAC CCCGGCAGCG GCTTCTGCCC CACCGGCGGC
TTCTGCATGG AAGGGATCTG CACCGCCGCG CACGGCCCTC ACGAGGCCGA GGTGAGCGTG
GAGCCCCTGC CCCTGTCCCT GCTGCGGGGC AAGGGCATGA CCGCGCTGGT GGTGGTGCAC
GACATTTCCG GACGCCGCAC CGCCGAACGC CAGGCCCGGC TGTTCGAACG GGTGTTCCGC
AACGCGCTGG AAGGCATCTG CATCACCGAC CCGGAAGGGA TCATCGTCGC GGTGAACCCG
GCCTTCACCA CCATCACCGG ATACCCGGCG GACGACGCCG TGGGCCAGAG CCCGCGCCTC
CTGAAATCGC ACCATCACGA CAGCGCCTTC TACGAAGACA TGTGGCGCGC GCTGGTGGAG
GAAGGCCGCT GGGAAGACGA GATATGGAAC CGCCGCAGGA ACGGCGAAGT GTACCCCGAA
TGGCTGAGCA TCAGCGCCAT TCCCGGCCCC ACCGGACGCA CCGAGTACTA CGTGGCCGTG
TTTCACGACA TCACGGAGCT GAAGGCCAAG GAATCGCAGA TCCAGCACCA GGCCCACCAC
GACGCGCTCA CCGGCCTGCC CAACCGCGCC CTGCTGCGCG ACCGGCTGGG CATGGCCATC
AACGGCGCCC GGCGCGAGGA CCGCAAGGTG GCCGTGCTGT CGGTGGACCT GGACAACTTC
AAGCAGGTCA ACGACAGCCT GGGCCACATG GTGGGCGACA TCTACCTGCA ACAGGCCGCC
GAGCAGATGC GCCAGATGGT GCGCCCGCAG GACACCCTGG CCCGCGTGGG CGGCGACGAA
TTCGTGGTGG TGCTGCAAGA CGTGGAGGGC GAACGCGACG CGGCGCAGGT GGCCGAACGA
CTGCTGGCCC GGTTCACCGA CCCGGTGCGG GTGCAGGAAC ATGAGCTGTT CGTGGGCGCC
AGCGTGGGCA TCGCCCTGTT TCCCGACGAC GGCGACGACC CCGACACCCT GGTGCGCAAC
GCCGACATCG CCATGTCGCG CGCCAAGGAA CAGGGCAAGC GCCGCTACCA CCTGTTCACC
CCGGCCATGA ACGACCGCGC CGTGCGCCGC CTGTCGCTGG AAGGCGACCT GCACCGCGCC
CTGGCCGCCG GAGACATCAC CGCCCACTAC CAGCCGCGCG TGGACCTGAA CACCGGCCTG
ATCACCGGCA TGGAGGCCCT GGCCCGCTGG ATCCGCGCCG ACGGCAGCCA GGAGCACCCG
GCGGAGTTCA TCCCCCTGGC CGAATCCACG GGGCTCATCG TGCCCCTTGG CGAACACATG
CTGCGCCTGG CCTGCGCGAA AACCCGCGCC CTGTGCGATG CAGGACACGC CGACCTGCAC
GTGGCCGTGA ACCTTTCGGT GCACCAGTTC CGCCACCGCA ACCTGGTGGG CATGGTGGCC
GACGTGCTGG CCGAAACGGG CCTGCCGCCG CACCTGCTGG AACTGGAGAT CACCGAATCC
ACCATCGTCA CCGACGTGGA CCATACCATC CGCAAGCTGA ACCAGCTCGC GGAAATGGGC
ATCGCCCTTT CGGTGGACGA CTTCGGCACC GGGTATTCCT CGCTGTACCA GCTCAAGAAC
CTGCCGCTGA CCTCGCTGAA GATCGACCGT TCGTTCATCC GCGACATCCC CGACGACCCC
AACGACGCGG CCATCGCCGC CACCATCATC ACCATGGCCG ACCGGCTGGG GTTGCGCGTA
GTGGCCGAAG GGGTGGAAAC GCCGGAACAG CTCAACTTCC TGCTGCTGGA AGGCTGCCAC
GAGGTACAGG GATTCCTGTT CAGCCGCCCC CTGCCGCCGG ACGAGTTCAC CGCTCTGCTG
GCACGGGGCA GACTGCTGAC CGTGCCCCGC GATGGAGACG GCGGCATCTG A
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| Protein sequence | MTGDMPQHMR DEEQEHRAAG GPANAENPGQ NAPGQGAPGQ NTSGSQTPGL LRALLDNPLV
ALFLRDGEGR YLAANHLYAD LAGVPGKDVV GLSPRDIFPH AVASALLDED RRVAEDSTPL
LCERMLPADE AERVFRVAKL PLPPEVAGPG AVLGLAFDVT ALVEAEIEEE VRQRTAALAE
STARFRALFE LAPDAVYVRG EGGRIVDCNR AAERMSGHPR ETLLSLRTAD LLPPDIEVRI
DNLLTGCPLP VATHPDSTPA EPRQGTDGAN PGSGFCPTGG FCMEGICTAA HGPHEAEVSV
EPLPLSLLRG KGMTALVVVH DISGRRTAER QARLFERVFR NALEGICITD PEGIIVAVNP
AFTTITGYPA DDAVGQSPRL LKSHHHDSAF YEDMWRALVE EGRWEDEIWN RRRNGEVYPE
WLSISAIPGP TGRTEYYVAV FHDITELKAK ESQIQHQAHH DALTGLPNRA LLRDRLGMAI
NGARREDRKV AVLSVDLDNF KQVNDSLGHM VGDIYLQQAA EQMRQMVRPQ DTLARVGGDE
FVVVLQDVEG ERDAAQVAER LLARFTDPVR VQEHELFVGA SVGIALFPDD GDDPDTLVRN
ADIAMSRAKE QGKRRYHLFT PAMNDRAVRR LSLEGDLHRA LAAGDITAHY QPRVDLNTGL
ITGMEALARW IRADGSQEHP AEFIPLAEST GLIVPLGEHM LRLACAKTRA LCDAGHADLH
VAVNLSVHQF RHRNLVGMVA DVLAETGLPP HLLELEITES TIVTDVDHTI RKLNQLAEMG
IALSVDDFGT GYSSLYQLKN LPLTSLKIDR SFIRDIPDDP NDAAIAATII TMADRLGLRV
VAEGVETPEQ LNFLLLEGCH EVQGFLFSRP LPPDEFTALL ARGRLLTVPR DGDGGI
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