| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1383 |
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| Symbol | |
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| ID | 7173287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 1692323 |
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| End bp | 1693762 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 643539890 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_002435799 |
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| Protein GI | 218886478 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 87 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATA CCACCCCCCG CCCCGGCGAC CTTCTGGAAC TGACCGTGGA CGCCCTTGCC
GCCGGTGGCC GCGCCGTGTG CCGCCACGAG GGCCGCGTCG TGTTCGTGGC GGGCGGCCTG
CCCGGCCAAC GCGTGCGCGC CAGACTGACC ACGGTGAAGC GCCGCTTTGC CGAGGCCACG
CTGGACGCCG TGCTCGAACC GTCGCCCGTG CAGTGCGCCC CGTTCTGCGC CCACTTCGGC
GATTGCGGCG GCTGCGCCTG GCAGGACCTG CCCTACGCCG AGCAGCTGCG CTGGAAGGAG
CGCTTCGTGG TTGACGCGCT GGGGCGCATC GGCGGCCTGC GCGACGCCAA CGTGCTGCCC
ATCCTGGCTT CCCCCGCCGA GCGCGGCTTT CGCAACAAGA TGGAATTCGC CTTCAGCCAG
GACCGCGACG GCCAGTTGCA CCTGGGCCTG CGCCGCCGTG CCTCGCGCGC GGTGGTGGAC
ATCACGGAAT GCCACCTGCA AACGCCGCTC ACGGTGCGCA TCGTCGAGGC GGTGCGCGAG
CTTGCGCGCG AAAGCGGCCT TCCCGGCTGG GACGACAGCA GGCAGGACGG CTTCTGGCGC
TTTCTGGTGG TGCGCGAGCC GGAACTGGGG CGCGATGCCG GGGCCGACAC CCCGGCGGAA
GGCGAAGGCC AGGATACGCC GGGCCGCCAG TGCCTGATCC AGTGCATCAC CGGGCGGCAC
CCCGGTGCGG CGCAGGCCGT GTCGCGGCTG GCCGAGGCGC TGCGCGCCCG CTTCCCCGAG
GTGACCGGCG TGGTGCACTC ACTGCGTCTG GACCCGGAGC AGATCGCCTA CGGCGAACGG
GTACTGGCCG TGGACGGCGA GGCCGTGCTG ACCGAGCGCC TGGGCGGCAA CGACCTGCTG
CTGGGCCCCG ATTCGTTCTT CCAGACCAAC ACCGCCGCGG CGGGCCTGCT GTATGACGAG
GCGCGCCGCA TGGCCGCCGC CGGGCCGGAC GACACGGTGT GGGACCTGTA TTCCGGCGTG
GGAGCCATCG CCCTGCACCT GGCCCGCGCC GCCGGGGCGG TGCGCGGTTT CGAGATCACG
CCCGAGGCGG TCAACGATGC CCGCGCCAAC GCCGCGCGCA ACAACATCCT GAACTGTTCC
TTCGTCTCCG GCGACGTGCG CGCCAGCCTG CGCCGCGAGC GCCCCGGCGA GGGCGTGTCG
CCGCGCATCG TGGTCGTGGA CCCGCCCCGC GCGGGCCTGC ACGAGGACGT GGTGGAGGCC
GTGTCCGCCC ACCAGCCGGA GCGTATCGTG TACGTTTCGT GCAACCCGGC CACCATGGCC
CGCGACGCGG CCCTGTTCAC CGCGCGCGGG TATGCGCTGC AAGAGGCGCG GCCCGTCGAT
CTGTTCCCCC ATTCGCCCCA CGTGGAATGC GTGGCCCTGC TGACCCGCAC CGGGGAGTAG
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| Protein sequence | MSDTTPRPGD LLELTVDALA AGGRAVCRHE GRVVFVAGGL PGQRVRARLT TVKRRFAEAT
LDAVLEPSPV QCAPFCAHFG DCGGCAWQDL PYAEQLRWKE RFVVDALGRI GGLRDANVLP
ILASPAERGF RNKMEFAFSQ DRDGQLHLGL RRRASRAVVD ITECHLQTPL TVRIVEAVRE
LARESGLPGW DDSRQDGFWR FLVVREPELG RDAGADTPAE GEGQDTPGRQ CLIQCITGRH
PGAAQAVSRL AEALRARFPE VTGVVHSLRL DPEQIAYGER VLAVDGEAVL TERLGGNDLL
LGPDSFFQTN TAAAGLLYDE ARRMAAAGPD DTVWDLYSGV GAIALHLARA AGAVRGFEIT
PEAVNDARAN AARNNILNCS FVSGDVRASL RRERPGEGVS PRIVVVDPPR AGLHEDVVEA
VSAHQPERIV YVSCNPATMA RDAALFTARG YALQEARPVD LFPHSPHVEC VALLTRTGE
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