| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1238 |
|---|
| Symbol | |
|---|
| ID | 7173141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1525635 |
|---|
| End bp | 1527209 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643539746 |
|---|
| Product | spermine synthase |
|---|
| Protein accession | YP_002435656 |
|---|
| Protein GI | 218886335 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.103635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACG CGATCATGTT CCTGTCCGGC ACCATGGTCA TGGTGCTCGA AATGGTGGGG
GCGCGCCTGC TGGCCCCGCA CCTTGGCACC TCGGTCATCG TCTGGACCAG CCTCATCGGC
GTGGTGCTGG CCAGCCTGAG CGCGGGCTAC TGGCTGGGCG GCCGCCTGGC CGACCGCACC
CTGTCGCGGC GCACCCTCTC GCGCATCCTG ACCGGGGCCG CGCTGTCCGT GCTGGTCGTG
GCCCTGGCGC ATGGCCGGGT GGTGGGCTGG GTGGCCGGGG CGCTGGATTC GCTGCATGTG
GCCGCCGTTG TGGCCGCCGT GCTGCTGTTT GCCGTGCCGG GCGTGCTGTG CGGCATGGTG
TCGCCCTACG TGGTGCGCCT GGCCCTGTCG GACATGGACA CCTCTGGCGC GGTGGTGGGG
CGGCTGTACG CCGTGTCCAC CACGGGCAGC ATCCTGGGCA CCTTCCTGGG GGGCATGGTG
CTGGTTTCGT GGTTCGGCAG CACGCTGATC CTGCACGGGG TGGCTGCCTG CCTGCTGGGG
GCCTCGCTGC TGGCGCACCC CCGCGCGCCG CTGGCCCGGC TGGCCCTGCT GGCCGGGGTG
GGCGCGCTGG CCTGGGCCTC GCACGCCTAT GCCGCCTTTG CCGAGCGCTA CTACGGGGTG
CGGGTGACCG AGACGCCGTA CAACCACATC CGGGTCTACG ACGCCACCCA GGCCGGGCGG
CCCCTGCGCC TGCTGGCCAC CGATCCGGGG CGTTACCAGT CCGCCGCCTA TCCCGACGAC
ATGGCCGAAC TGGCCCTGCC GTACACCCGC TTCTACGCGC TGGGGCCAGC GCTGGTGCCC
GGCGCGCGCC GGGTGCTCAT GCTGGGCGGC GGCGGGTATT CCGTGCCCAA GTGGCTGCTT
TCCGGGCGGG CCGGGCTGAA CGCGGACACG CTGCGGGTGG ACGTGGTGGA ACTGGACCCC
GGCATGACCG GGGTGGCCCG CCAGCACTTC GGCCTGGAGG ACGACGCGCG GCTGCGCATC
TTTCACGAGG ACGCGCGGGC CTTCCTGAAC CGGCGGGCGC AGGTCCGGGC CGGGCAGGGT
GCCGGTGCGG CCAGCACCGC CGATGCAGGC GCCTTGGGGG ATGGGGGCGG CGCGGCCCGC
TACGACCTGA TCTTCACCGA CATCTTCAAT TCGTACTATT CGGTGCCCTT TCATGTGGGC
ACCGTGGAGG CGGCCCGCCG CATGCGCGCG CTGCTGGCCG ACGACGGGGC CGTGGTCATG
AACATCATTT CCGCCGCCGG GGGCGAGGAC GGGCGGCTGT TCCGGGCCAT CCGCGCGGCG
TTCGCCGCCT CGTTCGCGGA TGTGCGGGTG TACGCAGTGG CCACCGCCGA TTCCGTGGAC
TACGTGCAGA ACCTGATGCT GGTGGCCCGC CCGGCAGGAG GGCCATCGGA GGTGCCCTCC
GCCGCCCTGA CGCCCGAGGT GCGCAAGATG CTGGCTCGTC GGCTGGAGCT GCCCGCCAGC
GACGACGTGC CCCCGCTGAC CGACGAATAC GCCCCGGTGG AGCGGTATGC GCTGGGGCTG
GTGCGCTGGC GGTAG
|
|---|
| Protein sequence | MLDAIMFLSG TMVMVLEMVG ARLLAPHLGT SVIVWTSLIG VVLASLSAGY WLGGRLADRT
LSRRTLSRIL TGAALSVLVV ALAHGRVVGW VAGALDSLHV AAVVAAVLLF AVPGVLCGMV
SPYVVRLALS DMDTSGAVVG RLYAVSTTGS ILGTFLGGMV LVSWFGSTLI LHGVAACLLG
ASLLAHPRAP LARLALLAGV GALAWASHAY AAFAERYYGV RVTETPYNHI RVYDATQAGR
PLRLLATDPG RYQSAAYPDD MAELALPYTR FYALGPALVP GARRVLMLGG GGYSVPKWLL
SGRAGLNADT LRVDVVELDP GMTGVARQHF GLEDDARLRI FHEDARAFLN RRAQVRAGQG
AGAASTADAG ALGDGGGAAR YDLIFTDIFN SYYSVPFHVG TVEAARRMRA LLADDGAVVM
NIISAAGGED GRLFRAIRAA FAASFADVRV YAVATADSVD YVQNLMLVAR PAGGPSEVPS
AALTPEVRKM LARRLELPAS DDVPPLTDEY APVERYALGL VRWR
|
|---|
| |