| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1213 |
|---|
| Symbol | |
|---|
| ID | 7173116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1491817 |
|---|
| End bp | 1493421 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643539722 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_002435632 |
|---|
| Protein GI | 218886311 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 0.192414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAG GGACGACACA GGGCATGGCC GCGGCGCTGG GACCGCTGCT GCAAGGGCTG
TTCGATCAGC CGGTGGCGGC GCGGACCCTG CTGGACCGCA TCCCCTTGCC GCTGGCGCTG
GTTTCCGCCG AGCGGCGGGT GATGTTCCTG AATCAGGCGG CCTGCGCCCT TACGGCCATG
TCGCCCGAGC GGGCCCAGAA CCTGCCGTGC CGCTACGTGT TTCGATGCAG CCTGTGCACC
GGGGGCTGCC CGCTGGACGT GGTGGACAAG TCGCCCACGG CTGCCGTGGC CCCCGTGGCG
CGCGAGGCGG ACATCGTCAA CGCCGACCGC GCGCGCATTC CCGTGCGGGT GACCTGCGGC
GCGCTGACCG CGCCCGACGG CAGCCGGGTG GGCTACTTCG AGACGCTGGA GGATCTGCGC
CTGTTCCGCC CGGCAGAGGC CCGGCCGGAG TGGCCGCAGG GCTTCGGCGA CATGCTGGGG
CACAGCCCCG AGATGGAGCG GGTGTTCCGG TTGCTGCCGG GCATCGCCCA GACGGATTCC
TCGGTGCTGG TCACCGGAGA AACGGGCACC GGCAAGGATC TGCTGGCCGA GGCCCTGCAC
AATGCCTCCA CCCGGGCCAA GGGACCGTTC GTCAAGGTGA ACTGCGGCGC CCTGCCGGAA
AGCTTGCTGG AATCCGAGCT GTTCGGCCAC CAGAAGGGCG CGTTTACCGG GGCGTCGGAA
AACAAGCCGG GCCGCTTCCG GCTGGCCCAC AACGGCACGC TGTTCCTCAC CGAGGTGGGC
GACCTGCCCC TGCCGTTGCA GGTCAAGCTG CTGACCTTCC TGGACGACAA GATCATCCAT
CCGCTGGGCT CCACGCGCGG GGTGCACGTG GACGTGCGCA TCATGGCCGC CACCCACCGC
GACCTGCGGC GCATGGTGCG CGAGGGGCGC TTTCGCGAGG ATCTGCTGTA CCGCCTGAAC
GTGGTGCGTT TTCACCTGCC GCCCCTGCGC GAGCGCGGCG ACGACATCGC GCTGTTTCTG
GCGCATTACC TCAAGGTGTA CGCGGGCATG TTCGGCAAGC GGCTGACCGG GGTCTCCCCG
GCGGCGGAGC GGGTGCTGCT GCGCCACGCC TACCCCGGCA ACGTGCGGGA ATTGCGCAAT
ATCGTGGAAT ACTGCGTCAA CGTGTGCCAG GAGACCCACG TGGACCTGCC GCATCTGCCC
CGCTACCTGC TGGAAGAGAG CGGCGAGCCC GATGCCGCCG AAGGGGGCGG CGTGGCGACC
GTTGGCCAGC GGGTGGGGAC GGGGGCGCAA GCCCCGCGTG GCGGCGGCGT GGCTGGGGCG
GATTCCGGCG CTGCGGGCGC GGGCCTGTCA GGTCGTTCAA GGCATCCGGG TCATCCGGTA
CAGGGCGGCC CCCCCGGTTC TTCCGGCTCT CTCGGTTCTC CTGACCAGGG CGTGCCCTTC
GCCGGGGTGC CCCAGGGGGA TGCCACGTGG GCCGAGGCGG AGCGTCGCCT GATCATGGAG
GCGCTGGTGC AGGCGCGCGG ACGGCGCGGC GAGGCCGCAA TGGCGTTGGG CTGGGCGCGA
ACCACATTGT GGCGCAAGAT GCGCCAGTAC GGGTTGGATC AATGA
|
|---|
| Protein sequence | MAEGTTQGMA AALGPLLQGL FDQPVAARTL LDRIPLPLAL VSAERRVMFL NQAACALTAM
SPERAQNLPC RYVFRCSLCT GGCPLDVVDK SPTAAVAPVA READIVNADR ARIPVRVTCG
ALTAPDGSRV GYFETLEDLR LFRPAEARPE WPQGFGDMLG HSPEMERVFR LLPGIAQTDS
SVLVTGETGT GKDLLAEALH NASTRAKGPF VKVNCGALPE SLLESELFGH QKGAFTGASE
NKPGRFRLAH NGTLFLTEVG DLPLPLQVKL LTFLDDKIIH PLGSTRGVHV DVRIMAATHR
DLRRMVREGR FREDLLYRLN VVRFHLPPLR ERGDDIALFL AHYLKVYAGM FGKRLTGVSP
AAERVLLRHA YPGNVRELRN IVEYCVNVCQ ETHVDLPHLP RYLLEESGEP DAAEGGGVAT
VGQRVGTGAQ APRGGGVAGA DSGAAGAGLS GRSRHPGHPV QGGPPGSSGS LGSPDQGVPF
AGVPQGDATW AEAERRLIME ALVQARGRRG EAAMALGWAR TTLWRKMRQY GLDQ
|
|---|
| |