| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1166 |
|---|
| Symbol | |
|---|
| ID | 7173068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1441140 |
|---|
| End bp | 1442303 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643539678 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002435588 |
|---|
| Protein GI | 218886267 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 0.428965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA CAGTATTGCT CGTGCTGGCA CTTCTGCTGG TGCTGTCGGG CCAGGCGTTC
GCCGCCGACA CCATCAAGCT CGGCTTCGTC ATTCCCCTGA CCGGTGACAT CCCCAAGGTG
GGTGAGGCCT CGAAGTTTGC CGCCGAAATG CTGCGCGAAG AAATCAACGG CAAGGGCGGC
CTGGATGTGG GCGGCAAGAA GTACAAGCTC GAATTCGTGT TCGAGGACAA CGAAGCCAAG
CCCGAATCCG CCGTCAACGC CATGCTGAAG GTCATCGAGC GCGACCAGGT GCTGGCCGTG
GTCGGCCCGC AGTCGTCCAA GCAGGCCGTG CCCGCCGGCG GCGTTGCCAA CGACAACGAA
ACCCCGATGA TCTCGCCGTG GTCCACCAAC CCGGATACCA CCAAGGGCCG CCCCTGGGTG
TTCCGCGCCG CCTTCCTGGA TCCCTTCCAG GCCCCCGTGG TGGCCAACTT CGCCACCAAG
CAGTTCAAGG CCAAGAAGGC CGCCGTGCTG TTCGACATCT CCAACGACTA CTCGAAGGGC
CTTGCCGAGT TCTTCAAGGC GGAGTGGGAG AAGATGCACG GCGCCGGTTC CGTGGTGGGC
ATGGAATCGC ACGGCACCAA GGACCAGGAC TTCTCGGCCC AGCTGACCAA GGTTGTCGCC
GCCAAGCCCG ACTTCATCTT CCTGCCTGAA AACTACAACA TCGTCGCCCT TATCGTGAAG
CAGGCGCGCG ACCTTGGCTA CAAGGGTCCG TTCATGGGCT CCGACGCCTG GGGTTCCGCC
GAGCTGATGG ACCTGTGCGG CAAGGAATGC GTGGGCCAGT ACTTCTCCAC CCACTACGCC
GCCGCTGGCG CCACCGGCGC CACCAAGGAA TTCATCGACA AGTACAACAA CAAGTACGGC
TACATCCCCG ACGACGTGGC CGCGCTGACC TGGGACGCCA CCCGCCTCGT GCTTCAGGCC
ATCCAGAGCG TGGGCAAGGT TGACTCCGAT ACCCGCAAGA TGCGCAAGGC CGTGCGCGAC
GCCATGGTCA ACATCAAGAG CTTCGACGGC ATCACCGGCA AGATGAGCTT CGACGAAAAC
CGCGACCCCA TCAAGTGCGC CGTGGTCGTC AAGATCAGCG AGAAGGGCGA ATTCACCTTC
GCCGAATCGG TCTGCCCCAA GTAG
|
|---|
| Protein sequence | MKKTVLLVLA LLLVLSGQAF AADTIKLGFV IPLTGDIPKV GEASKFAAEM LREEINGKGG
LDVGGKKYKL EFVFEDNEAK PESAVNAMLK VIERDQVLAV VGPQSSKQAV PAGGVANDNE
TPMISPWSTN PDTTKGRPWV FRAAFLDPFQ APVVANFATK QFKAKKAAVL FDISNDYSKG
LAEFFKAEWE KMHGAGSVVG MESHGTKDQD FSAQLTKVVA AKPDFIFLPE NYNIVALIVK
QARDLGYKGP FMGSDAWGSA ELMDLCGKEC VGQYFSTHYA AAGATGATKE FIDKYNNKYG
YIPDDVAALT WDATRLVLQA IQSVGKVDSD TRKMRKAVRD AMVNIKSFDG ITGKMSFDEN
RDPIKCAVVV KISEKGEFTF AESVCPK
|
|---|
| |