Gene DvMF_1141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_1141 
Symbol 
ID7173042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp1398572 
End bp1401739 
Gene Length3168 bp 
Protein Length1055 aa 
Translation table11 
GC content70% 
IMG OID643539652 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_002435563 
Protein GI218886242 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGATG CAAACGACGC GGGCAGCCGT GAATGTCCGG AAGACGCGGA GTCGTCGGAA 
CTGCTCTGCC GCAAGAATCG GCAGGCCGAT CCGGCATATC CGGAATATCC GGCTTATCCG
GCTTATCCGG CAGACCCGGC CGATCCGGAC GTGCCAGCCA GCCCGGGCGG GCAATCAGCC
GGTCCGGCGG AACAGTTGCG GCGCGATGCC GAACTGTTTC GCGGCGTATT CCGCAACATG
AACGCGGGCG TGATGGTGTT GCGCCCCGTG CGCGCCCATG GGGACGACTG CGCCGACTTC
ACCCTGCTGG ACATCAACCC GGCGGGCGAA CGGCTGAGCC GTCTGACCCG GGCGGAATCT
ACCGGCAGCC TGCTGTCCGG CCTGCTGCCC GTCCCGGTGG CCGCCACCCT GCGTCAGGCC
CTGGCCCGTG CGTGGCGCAG CGGCATTGCC GAGCATCTTC CCTCCTTCCT CTACAGCGAC
AAGATACGCG GCTGCTGGCG CCACTACTTC ATCAGCCGCG CCGATTCGGG CGACCTGCTG
CTGATCTACG AGGACGTCAC CGAACGTTAC ATGGCCCTGG CCAACTTGGC CGCCGGAGAG
GAAAAGTATC GCGCCCTGGT GGAAAACACC CCGGACATCG TCATGCGCTT TGGCGGCGAC
CTGCGCCTTA GCTACGTCAA CGCCGCCGTC GTTCCCTATC TGGGACCGCC GGAAGCGCTG
ATGGGGCGCG GGGTGGCGGA ACTGGGCCTT GCCCCGCAGG TGGCGGATTT CTGGGCGCGC
CAGTTGCGCG GGGTGCTGGA ATCGGGCCGT CCGGTGCAGA CCGACTACGT GTTTCACGGT
CCTGCCGGGC GGGTGCTGTT CGACTGGCGG CTGGTGCCCG AGCGCGGTGT GGACGGGGGC
GTATCCTCCG TGCTCAGCCT GCTGCGCGAC GTGACCCGCC AGCGTTCCAC GGAGCATGAT
TTCCGCACCC TGTTCCGCAA GCTGATCACC AGTTTCGCCG TGCACGAGGT GCTGCTGGAT
GCCGGGGGGC GGCCCGTGGA TTTCCGGTTT CTGACGGTGA ATCCGGCCTT CGAGGCCATG
GCTGGCCGCC GGGCGGAAGA CGTGCTGGGA CGCACGGCCA GCGAGGTGTT CGGCCCGCAG
GACTCGGCAT GGATCGCCGT GCTGGGCCGG GTGGCCCTGA CCGGTGAGCC GCTGCACACG
GAACGCTATT CCCGCAACAT GGGAAAATGG CTGGAGATGA CCGTGTACCG GGTGCGCGAA
CGCCAGTTCG CCATCATTGC CGCGGACATC ACCGAACGCC GCAACGCCCG GCGCGAACGC
AGGCTGAGCG CGGCGCGGCT GTCAGCCCTG CACCGCCTGT CGCGCATGGA CGCGGCGCCC
GAACGGTCGA TCATGCGCTT TGCGCTGGAA CAGGCAGTGC GCCTGACCGG CAGCGAGTTG
GGGTATCTTG CCCTGGTGGA CGGCGGGCGG GTGCCTGCGG ACGGCGTGCT GTGGTCGCAT
CTGGTGATGG AGCCGGGCCG GCTGGCAGCG CCTTCCGGCG CCTTGCCGGA GGCCGGGAAA
GACTGCGGGG CAGACGGCAG GGCAACCGTG GCGGGGCCGT GGTCCGAGGT GGTGCGTTCC
GGCCAGCCGG AAATCCGCAA CGGAGCCTCC GCCGGGGGGG CGGGCGCGTC TGGCCTGCCG
GGCGAGCCGG GCGATTCGGG CGCGGAACCG GCCCACCGCG TGGGCGGCAT GTCGTTGTGG
CGCCACCTGG CCGTGCCCGT GCTGGAAGAG GGGCGGCTGG TGGCCGTGGC GGGCGTGGCC
AACAAGGATC TGCCCTACGA ACGGGCCGAC CGCCGCCAGC TTGAGCTGTT CATGCACGGC
ATGTGGGAAC ACATCGCGCG GCGGCGGGCC ATGGTCTCGT TGCGGCGCGC CAAGGACGCC
GCCGAGGCGG CCAACCGCTC CAAGGACGAA TTTCTGGCCA ACATGAGCCA CGAACTGCGC
ACGCCGCTCA ACGGAGTGCT GGGCATGCTG CAACTGCTGG ACGGTCCGGA CCTGAGCGAC
GAGCGGCGCG GCTACCTGCG CACGGCGGTG GAATCCGGCC ATGCCCTGCT GCGCATCATC
GACGACCTGC TGGACATTTC CGCGCTGGGG GCGGGCGGAT CGGGCCTGCG CGACGAGCCG
TTCGACCCGG CGGCGGTACT GCGCCAGGTG GCCGAAATGG TGGACCCGGC AGCGCGGCGG
CGCGGGCTGG CGCTGGGGCT CATCGCCGAT GCGCTGCCCC TGCGGGTGCG CGGCGATGCG
GCGCGGCTGC GCCAGGTGCT GTACAATCTG GTGGCCAACG GGGTGAAGTT CACGCATCAG
GGCGGCGTGG ACATCCTGGC CTGCCCCGTG GGCGGCGACA GGCTGCTGTT CACCGTGCGC
GACACGGGCA TCGGCATTCC GGAAGAAAAG CTGCCCGTGG TCTGCGAACC CTTCGCGCAG
GTGGATGGTT CGTCCACCCG GCGCTACCAG GGGGCCGGGC TGGGCCTTGG CATCGTGCGC
CGCCAGGTGG CGCGCATGGG CGGCACCATG ACCATGGAGA GCGAGGAAGG CGTGGGCACC
TCCGTCCATG TCTGCCTGCC GTTGCCAGAG GTGGACGCCG CCAACGGAAC GAACGGAACG
AACGGGGTGA ACGGGGCGGG CAGGGCAAAC GGCGTGAACG GCAGGGCGCA TGACGGTGCC
CACCGCGCCG GTTTCGCATC CCCCGCATCT CCCGCATCTG CGGAATCCTG CGCGGAGTGC
CGCGCGGTCA CGGAGGCGGC GGCCCGGGAA TTGCGGGCGT TGCGGGTGCT GGTGGCGGAA
GACGACCTTA TCAACCGGCT TACGGTGCAA CGCATGCTGG AACGCGAAGG CCACCGGGCG
GTGTGCGTGG AAAACGGGGC CGATGCGGTG CGCGCGGCGG GCGAGGCGGA CTACGACATC
ATCCTCATGG ACATCCAGAT GCCCGGCATG GACGGCACAG AGGCCGCCCG GCGCATCAAC
GACCTTGCGC GCAGCACGGG CCGGACCCGT CCGCCCATCG TGGCCCTGAC CGCCCATGCC
CTGCGCGGCG ACCGCGAACG GTTCCTGGAG TCGGGCATGG ACGACTACAT CGCCAAGCCC
CTGGAGCGCG ACGTGTTGCG CCGGGTATTG CAACGGCTGT CGAACTGA
 
Protein sequence
MQDANDAGSR ECPEDAESSE LLCRKNRQAD PAYPEYPAYP AYPADPADPD VPASPGGQSA 
GPAEQLRRDA ELFRGVFRNM NAGVMVLRPV RAHGDDCADF TLLDINPAGE RLSRLTRAES
TGSLLSGLLP VPVAATLRQA LARAWRSGIA EHLPSFLYSD KIRGCWRHYF ISRADSGDLL
LIYEDVTERY MALANLAAGE EKYRALVENT PDIVMRFGGD LRLSYVNAAV VPYLGPPEAL
MGRGVAELGL APQVADFWAR QLRGVLESGR PVQTDYVFHG PAGRVLFDWR LVPERGVDGG
VSSVLSLLRD VTRQRSTEHD FRTLFRKLIT SFAVHEVLLD AGGRPVDFRF LTVNPAFEAM
AGRRAEDVLG RTASEVFGPQ DSAWIAVLGR VALTGEPLHT ERYSRNMGKW LEMTVYRVRE
RQFAIIAADI TERRNARRER RLSAARLSAL HRLSRMDAAP ERSIMRFALE QAVRLTGSEL
GYLALVDGGR VPADGVLWSH LVMEPGRLAA PSGALPEAGK DCGADGRATV AGPWSEVVRS
GQPEIRNGAS AGGAGASGLP GEPGDSGAEP AHRVGGMSLW RHLAVPVLEE GRLVAVAGVA
NKDLPYERAD RRQLELFMHG MWEHIARRRA MVSLRRAKDA AEAANRSKDE FLANMSHELR
TPLNGVLGML QLLDGPDLSD ERRGYLRTAV ESGHALLRII DDLLDISALG AGGSGLRDEP
FDPAAVLRQV AEMVDPAARR RGLALGLIAD ALPLRVRGDA ARLRQVLYNL VANGVKFTHQ
GGVDILACPV GGDRLLFTVR DTGIGIPEEK LPVVCEPFAQ VDGSSTRRYQ GAGLGLGIVR
RQVARMGGTM TMESEEGVGT SVHVCLPLPE VDAANGTNGT NGVNGAGRAN GVNGRAHDGA
HRAGFASPAS PASAESCAEC RAVTEAAARE LRALRVLVAE DDLINRLTVQ RMLEREGHRA
VCVENGADAV RAAGEADYDI ILMDIQMPGM DGTEAARRIN DLARSTGRTR PPIVALTAHA
LRGDRERFLE SGMDDYIAKP LERDVLRRVL QRLSN