| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1102 |
|---|
| Symbol | |
|---|
| ID | 7173003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1350278 |
|---|
| End bp | 1352341 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643539613 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002435524 |
|---|
| Protein GI | 218886203 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4564] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.0540262 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGTC TGGGCATTCG CGGCAAACTG CTGGCCAGCT ACATGCTGGT ATTCCTCGTG
CTGCTGTTGT GCGGCGGCGC CGGTGCGTAC ATATATGCCC GCAATGCCGT GGAACAGGCC
GTGGAAGAGC GGCTGCACGC GGCCACCCAG TCCATTCTGG GCACCGTGCG CGTGGGGGCG
GATCTTGCGG TGCGCAACTA CCTGCGTGCC GCTTCGGAAA AGGCCCGCGA CGTGGTGGCG
CTGGAATACG AGCGCTACCG TTCAGGCGCC ATCACCGAGG CGCAGGCCAA GGCCAATGCC
GCCGCCATCC TGCTGCGCAT GAGCATAGCC CGGTCAGGCT ACATCTATTG CCTTACCTCC
AACGCCACCC TGGCGGTGCA CCCGGTATCG TCACTGCTGG GGCGCGATCT TTCGGAGTTC
GAGTTCGTGC GGGACCAGTC GCGCCTGCAC GAAGGCTTCA TGCAGTACGA ATGGCGCAAT
CCCGGCGAAA CGCACGCCCG CCCCAAGGCG CTGCACATGA CCTGGTTCCA GCCGTGGGAC
TGGATCATTT CCGCATCTGC CTACCGCGAG GAATTCCGCA ACCTGCTGGA CGTCACCATG
CTGCGCGATG CCGTGCTCTC GCACCGGGTG GGCGATACCG GCTATGCCTA CATCATGACC
GGTGCGGGCG AACTGCTGGT GCACCCGGTG ATGGAGCCGG GCGACATCGC CGACGCGCGC
GACGACACGG GCCGCCGCTT CGTGCGAGAG ATGCTGCAAA AGCGGTCGGG CCGCATCGTC
TACTCCTGGC GCAACCCCGG CGAAGGCCAC TACCGCGAGA AGATCGTGGT CTACGCCTAT
CTTGCGGACT ACGACTGGAT CGTGGCCGCA TCCGGGTATA CCGACGAGAT TTACGCCCCC
CTCGACCGCA TGCGCCGCCT TGCCCTCGTG TGGCTGCTGG CGGCCACCGG GGTGGTGGCG
CTGGCCAGCC TGTACGCCAG CGCAGGCATC ACCGGGCCGT TGCGGCGGCT GACCGAGCGG
GTGCGCGTGG GCGCCGGGGG CGACCTTTCG GTGCGCATAG TGCCGGAAAC CCATGATGAA
ATTGGTGATC TTGCCAACTA TTTCAACAGG CTGATGGGCA ACCTGGAAGG GCACAGCCTG
CGCATGGGCC AATTGGTGGA GGCGCGCACG GCGGAACTGA CCCGCCTCAA CGCAGACTAT
CTGGGCGAAC TGGAACGCCG CGCCGCCTCG GAAGAAGAGG CCCGGAGCCG CCTGGCCTTT
TTGCAGGCGC TGATGAATGC CATTCCCAAC CCCATTTATT ACCGCGATTT CACGGGCCGC
TTCGTGGACT GCAACGACAG CTTTGCGCGG ATGGTGCTGG GCTGCGCGCG AGAGGACGTG
CGCGGCCGTC CGCCGGGCGA CTTTCCCGAC GTGTATCCGG CGGACGTGGC CGGTGCCGTG
CTGCGCGACG ACGACGAACT GCGCCATGTG GGCGGCACCC GCAGTGGCGA GCAGACCCTG
CGCTGCGCCG ACGGGGCTGC GCACCATTTC AGCGTGGCCA AGACCGTGTT TGCCGGAGGC
ACGGCGGGCG AGGGCGGCAT CATCGGTGTG CTCACCGACC TTACGGCGCG CCGTCGGGCC
GAAGACGCGC GGCGCCTGCT GGAACAGGCG GTGGAGAACT TTTCCGGTGC CTTGCTGATT
CTGGATGGCG AGGGCTTCAT CCGGTACGCC AACCCGGCCT TTGCGACCAT TACCGGATGG
CCGCGCACCG ACGCGGTGGA CCGTCGCCTT GCGGACCTTG GTGCTGCAGG TGAGGTGGGC
GGTGCCGCCG CCGGGAGTGG TGCCGCGACG GCTGGCGGCG GCAGCGGGGA CGCCGGGTTT
GCCGCGTTGC TGGCGGCCCG TGCCCAGGGC AAGGCGTGGA GCGGGCAAAT CCGGCTGCGG
CGCGGCGACG GCAGGCCGTT CGACGCGGAA TGCCGCCTGG CCCCTTTGCG CGACGCCACT
GGCGCGGTGA CCCACTTCGT GTGCACCATC GAGGACGTCA GCGAGCGGCT GCAGTTGCAG
GCCCGCCTGT CGCAGGTCCA GTAG
|
|---|
| Protein sequence | MTGLGIRGKL LASYMLVFLV LLLCGGAGAY IYARNAVEQA VEERLHAATQ SILGTVRVGA
DLAVRNYLRA ASEKARDVVA LEYERYRSGA ITEAQAKANA AAILLRMSIA RSGYIYCLTS
NATLAVHPVS SLLGRDLSEF EFVRDQSRLH EGFMQYEWRN PGETHARPKA LHMTWFQPWD
WIISASAYRE EFRNLLDVTM LRDAVLSHRV GDTGYAYIMT GAGELLVHPV MEPGDIADAR
DDTGRRFVRE MLQKRSGRIV YSWRNPGEGH YREKIVVYAY LADYDWIVAA SGYTDEIYAP
LDRMRRLALV WLLAATGVVA LASLYASAGI TGPLRRLTER VRVGAGGDLS VRIVPETHDE
IGDLANYFNR LMGNLEGHSL RMGQLVEART AELTRLNADY LGELERRAAS EEEARSRLAF
LQALMNAIPN PIYYRDFTGR FVDCNDSFAR MVLGCAREDV RGRPPGDFPD VYPADVAGAV
LRDDDELRHV GGTRSGEQTL RCADGAAHHF SVAKTVFAGG TAGEGGIIGV LTDLTARRRA
EDARRLLEQA VENFSGALLI LDGEGFIRYA NPAFATITGW PRTDAVDRRL ADLGAAGEVG
GAAAGSGAAT AGGGSGDAGF AALLAARAQG KAWSGQIRLR RGDGRPFDAE CRLAPLRDAT
GAVTHFVCTI EDVSERLQLQ ARLSQVQ
|
|---|
| |