Gene DvMF_1028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_1028 
Symbol 
ID7172924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp1247610 
End bp1249316 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content64% 
IMG OID643539535 
Producttype II secretion system protein E 
Protein accessionYP_002435451 
Protein GI218886130 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value0.328232 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGTCAGC GTGTACGATT GGGCGAACTG CTGGTGCAGG CCGGACTGCT TACCGACGAG 
CAGCTGAAGG CCGCCCTGCG CGAACACAAG AAAAGCGGGC TGCGTCTTGG CCAGTACCTG
ACCAAGACCA ACCTGTGCCG CGAAGCCGAC GTGGTGGAAG TGATAAGCCG CCAGCTGAAG
ATAGAACGGT ACACCCCGCA GCAGCACCCG CTCAGCCTGA ACATGGCGGA ACGCCTGCCG
CTGGACGTGG CCCAGAAGTG CAGCGCGGCG CCCCTGCAAC AGTACGGCCA TGTTCTGGTG
GTGGCCATGG TGGACCCGCT GGACATCGAC GCGCTGGACA CGCTGGAATT CGCCACCAAC
AGCGAGGTGG AACCGCTGAT CTGCACGGAA CAGGAATACA ACCAGCTGTT CAGTGCCATC
TACGGCATGT TCACCAACCT TGACGGCGTC ATCGAAAGCC TGGGCGAGCT GCACACCGCC
GCCACCAGCC AGACCAACAC CGCCGAGCGT GACGTGGCCG TGGACGAACT GGCCAACCAG
GCCGACCTTG CGCCCATCGT GCGGCTGGTC AACTCCATTC TGGCGCAGGC CGTGCGCGAA
GGCGCCAGCG ACGTGCACAT CAGTCCCGAA AAGGACAGCG TGCAGGTGCG CTTTCGCATA
GACGGCAAGC TGCGCGAGGC CCCGGCCCCG CCCCGCAGCG TTGCCCCTGC CGTTGTTTCG
CGCATCAAGA TATTGGGCAA CATGGACATT GCCGTCACCC GCGTGCCGCA GGATGGCCGC
TTTACCATGC ACCTGGACAA CCGCGAGATA AACGTGCGCG TTTCCAGCAT ACCCACCATC
TACGGCGAAA ACATGGTGCT GCGCCTGCTG GACATGAGCG GGCGCGACTA CACGCTGGAC
ATGCTGGGCA TGCAGCAGAG CGACCACGTT ACCATCGAGG GGGCCATCCA CAAGCCCTAC
GGCATGATCC TGTCCACCGG CCCCACGGGC AGCGGCAAGT CCACCAGCCT GTACGCCATC
CTCAAAAGCA TCAACAGGCC GGATATCAAC ATCATCACCC TGGAAGATCC GGTGGAATAC
CGCATCCGGG GCATCCGGCA GGTACAGCTC AACCGCAAGG CGGGCATGAC CTTTGCCAGC
GGCCTGCGCT CCATCCTGCG GCAGGACCCG GACGTGGTGA TGGTGGGTGA AATACGCGAC
GCGGAAACCG CCGCCATTGC CGTGCAGGCC GCCCTTACCG GCCACCTTGT GCTGTCCACC
CTGCACACCA ACGATGCAGC GGGCGCGGTG ACACGGCTCA TCGACATGGG CATAGAGCCG
TTTCTTGTTT CTTCCGTGCT GCTGGTTTCG TTCGCACAGC GGCTGGTGCG CCGGGTGTGC
ACCAACTGCG CGGAACCGTA CGAGCCGCTG CCCGCCGCGC TGGCCGCCTT CGGCCTTGCG
CCGGACACGC CGGGGGCCAC CTACCTGAGG GGGCGCGGCT GCCACCACTG CGCGAACACC
GGCTACCGGG GGCGCACCGG GGTATTCGAG ATACTGCCCA TGACCCAGAT GATTCAAGAA
CTGGTGATCA AGCGCAGTTC CACGCAAGCC ATCGCGGATG CGGCCATAGA GACGAACCTG
ATGCGCACCC TGAAGCAGGA TGCAGCGCTG AAAATCCTGC GCGGCACCAC TACAGTTGAG
GAGGCGGCGA CCTCCGTCAT GCTGTAG
 
Protein sequence
MRQRVRLGEL LVQAGLLTDE QLKAALREHK KSGLRLGQYL TKTNLCREAD VVEVISRQLK 
IERYTPQQHP LSLNMAERLP LDVAQKCSAA PLQQYGHVLV VAMVDPLDID ALDTLEFATN
SEVEPLICTE QEYNQLFSAI YGMFTNLDGV IESLGELHTA ATSQTNTAER DVAVDELANQ
ADLAPIVRLV NSILAQAVRE GASDVHISPE KDSVQVRFRI DGKLREAPAP PRSVAPAVVS
RIKILGNMDI AVTRVPQDGR FTMHLDNREI NVRVSSIPTI YGENMVLRLL DMSGRDYTLD
MLGMQQSDHV TIEGAIHKPY GMILSTGPTG SGKSTSLYAI LKSINRPDIN IITLEDPVEY
RIRGIRQVQL NRKAGMTFAS GLRSILRQDP DVVMVGEIRD AETAAIAVQA ALTGHLVLST
LHTNDAAGAV TRLIDMGIEP FLVSSVLLVS FAQRLVRRVC TNCAEPYEPL PAALAAFGLA
PDTPGATYLR GRGCHHCANT GYRGRTGVFE ILPMTQMIQE LVIKRSSTQA IADAAIETNL
MRTLKQDAAL KILRGTTTVE EAATSVML