| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0925 |
|---|
| Symbol | |
|---|
| ID | 7172819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 1119239 |
|---|
| End bp | 1122352 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643539430 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_002435348 |
|---|
| Protein GI | 218886027 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAGA AGAAACGCGA GGAAAGCTAC GTGCTGCCCG ACGCCAATGA TCTGGCAACC
CTGTTCCGCG AAGCGCACCG CCCGCTGAAG ATCGACGCGC TGATGCGCAT GCTGGGCCTG
CACCGCCGCA TGAAGAAGGA ACTGGAAGAC CGCCTGGACG ACCTTGTCCG GCAGGGGCGC
ATCATCCGCC TGCGCGGCGG GGCCTGGGGC CTTGTGGAAC AGCTGCGGCT GGTCACGGGC
ACCCTGTCCA TCCAGCGTTC CGGCATGGGC TTCGTGCTGC CCGAGGAAAA GGGGCGCGAC
GACATCTACG TGCATCCCTA CCAGATGGGC GATGCCTGGC ACGGCGACAA GGTGGTGGTG
GCCCTGCTGC CGGGCCGTCA CGGCAAGAAC CCGGAAGGGC GCATCGTGCG CGTGCTGGAG
CGGGGCCGCA AGGAAATACC CGCCCGCGTG GTGCGCCGCA TGGGCAGGCA CAGCCTGCTG
TGCCGCCCGG CTGACCCGCG CATGGCCGTC AGCTTCGTGG TGGACATGAG CGCCGTGGAA
GAGAAGGCCG AAAAGGGCGA CCTTGTGGTG GCCGCACCCG GAGAAAAGGT GGAGGACGGC
CTGTGGGCCG CCACCGGGCT TGCCGTACTG GGCGCCGACG ACAACGTGCT GGTGCAGGAA
CGGCTGGTGA AGATCAACCA CGACGTGCCC GGCGACTTTC CGCCCGAGGT GCTGGAAGAA
GCCCGCGACC TGCCCGCAGT GCCCGGTCGC GACGACATGG AAGGACGCAT CGACCTGCGC
CATCTGGAGT TCGTCACCAT CGACGGGGCC AAGGCCCGAG ACTTCGACGA CGCCGTGTAC
GTGGAAGAGC AGGGCACCGG CTACCGCCTG TGGGTGGCCA TCGCCGACGT GGCCCATTAC
GTGCGCCCCG GCTCTGCCAT GGACCGCGAG GCGCAGGCCC GGTCCAACTC GTACTATTTC
CCGCAGTCGG TGGAGCCCAT GCTGCCCGAG GCCCTTTCCA ACGGGCTGTG CAGCCTGAAC
CCGCGCGTGC CCCGGCTGGC CATGGTGGCG GAAACCTTCT TCTACGCCGA CGGCACCCCC
GGGCGCAGCA AGTTCTATGC GGCCATCATC GAGTCCAAGG CCCGCCTGAC CTACGGGCAG
GTCAACCGGG CGATCATCGA GAAGGACGAG AAGGAGCGCC GCCTGCTCAC CCCGGTGCTG
CCCCTTCTGG AACGCGCCGA AGCGCTGGCC CGCCTGCTGA ACGCCAAGCG CAGCGAACGC
GGCAGCCTGG ACTTCGACCT GCCCGAGCCG GAGGTGATCT TCAACATCTA CGGCGAGACG
GTGGACATTG GCCGCAAGGT GCGCCACTTC GGCCACCAGA TCATCGAGGA GTTCATGATC
GCCGCCAACG AGGCGGTGGC CCGCTTCCTG ACCGAAAAGA ACGCCCGCTT CCTGTACCGG
GTGCACCCGG AGCCGGACAC CGAAAAGCTG GAAGGGCTGT TCAAGGTGCT GGGCCGCACC
TCGCTTGCCC AGCACCTGCC CGGCAAGGCA TCGGCCAAGG CGTTGCAGGG CGTGTTGCAG
GCGGCCAAGG GGTCGGACCA GGAGTTCCTG GTCAACCGCA TGGCCCTGCG CACCATGATG
CAGGCCCGCT ATGCGCCCGA CCACGAAGGA CATTTCGGCC TTGCCTCCGA GTGCTACTGC
CACTTCACCT CGCCCATCCG CCGCTACGCG GACCTGGTGG TGCACCGCGC CCTGCGACGC
ACCCTGGGGC TGCCGGTGAA CGGGCCGCTG CCGGGCGAGC GGGCCCTGCT GACCATCGCC
GACACTCTGA ACACCAACGA GCGTGTGGCC ATGGAGGCCG AGCGCGAGAT ACTCAAGCGC
ATCACCGTGC TGTTCCTGTC CGAACGGGTG GGCGAGGAGT TCACCGGGGT CATTTCCGGC
ATCATCGACT TCGGCTTCTT CGTGGAATTC AACGAGGTGA TGGCCGAGGG CATGGTGCGG
TTGTCGTCGC TGGACGACGA CTACTACGGC TACCTGCCGG AGCGGCAGGA ACTGGTGGGC
GAGCGCACGG GTCGCAGCTT CCGTCTGGGA CAGACCGTGA CCGTGCGCCT GGCCGAGGTC
AACGTGGCCC GGCTGGAAGT GAATCTGGCG CTGGCCGGTC CGGACGCCGT GGCGTCCACG
GGCGTGCGCA AGGAACGCCG CGAACGGCGC GATTATGGTG GGCGGAGCGG ACGGGACGCC
CGTGGCGGAC GCGGTGCGCG GCCCGGTGAG CGTTCTGGCG AACGGTCTGG CAGGCCCGAA
GGGCGTGATG CCCGCACAGG CATCCGCCAG GCCGACAGCG TGGCCGCAGC GCCCGCCGGG
GCTGGCGCCA TTGACGATCG CGCCGCCCGC AAGGCCCGTG CGCGCGCGGC CACCGATGCC
GGATTGGATG ATCCGATGCC GACGCCCATT CCGGAACCGT TGGAAAACGC CCCGCGCCGT
GCGCGAAAGA CCTCGCAGCA TGGCAAGGAG CGGGTCGCCG CCGAGCCCGC TTCCGACCGC
ATGGATGGCG CCGCGAAGAA GGCCGACAGT GTCTTTGGGC AAGCCCCGGC AAAACCGGAT
CAGGCTAGCC GTGGCAGGGG CGGCGACGCC AAGGCCAGGA CGCGGGGGGA CAAGGATCCC
TCCCCGGTGA AGTCTGGCGG CAAGGAACGC GCTGGCGACG GGGAAAAGTC CCTCGCCAAG
TCCCCCGCCA AGTCCAAGGA CAGCGGCGTG GCCGCCACCC ACGCTAAGGC CGGCGCAGAC
GCAGTCAAAG CTGGAGCGGC TTCCGACAGG CCCGTGCCGG GCACGGAGGC CGCAGGCACG
ACTGCCAAGC GGGGGAATGC CCCGAATGCG CCGACCCGGC CAGGGAATGC AGGAACGTCT
GGTCCGGACA AGCCCGGTCC GGACACGTCG GGCAGGGACA AGTCGGGCAG GGGGAAGGCA
ACCGGCAACG GTTCCGCCAA GGGCGCACAG TCCGCAAAAG GCAAGCGCGC GTCCGCCAAG
GCCGAACCCG CCGGGACGGA GTCCCCCAGG GCGGAATCCC CCAGGACTGG TGCGCCTGGG
CCCAAGTCTC CCAAACCCGC ACCCGCCAAG GCCCCAAAGG ACGGCAAGGG CTAG
|
|---|
| Protein sequence | MTKKKREESY VLPDANDLAT LFREAHRPLK IDALMRMLGL HRRMKKELED RLDDLVRQGR
IIRLRGGAWG LVEQLRLVTG TLSIQRSGMG FVLPEEKGRD DIYVHPYQMG DAWHGDKVVV
ALLPGRHGKN PEGRIVRVLE RGRKEIPARV VRRMGRHSLL CRPADPRMAV SFVVDMSAVE
EKAEKGDLVV AAPGEKVEDG LWAATGLAVL GADDNVLVQE RLVKINHDVP GDFPPEVLEE
ARDLPAVPGR DDMEGRIDLR HLEFVTIDGA KARDFDDAVY VEEQGTGYRL WVAIADVAHY
VRPGSAMDRE AQARSNSYYF PQSVEPMLPE ALSNGLCSLN PRVPRLAMVA ETFFYADGTP
GRSKFYAAII ESKARLTYGQ VNRAIIEKDE KERRLLTPVL PLLERAEALA RLLNAKRSER
GSLDFDLPEP EVIFNIYGET VDIGRKVRHF GHQIIEEFMI AANEAVARFL TEKNARFLYR
VHPEPDTEKL EGLFKVLGRT SLAQHLPGKA SAKALQGVLQ AAKGSDQEFL VNRMALRTMM
QARYAPDHEG HFGLASECYC HFTSPIRRYA DLVVHRALRR TLGLPVNGPL PGERALLTIA
DTLNTNERVA MEAEREILKR ITVLFLSERV GEEFTGVISG IIDFGFFVEF NEVMAEGMVR
LSSLDDDYYG YLPERQELVG ERTGRSFRLG QTVTVRLAEV NVARLEVNLA LAGPDAVAST
GVRKERRERR DYGGRSGRDA RGGRGARPGE RSGERSGRPE GRDARTGIRQ ADSVAAAPAG
AGAIDDRAAR KARARAATDA GLDDPMPTPI PEPLENAPRR ARKTSQHGKE RVAAEPASDR
MDGAAKKADS VFGQAPAKPD QASRGRGGDA KARTRGDKDP SPVKSGGKER AGDGEKSLAK
SPAKSKDSGV AATHAKAGAD AVKAGAASDR PVPGTEAAGT TAKRGNAPNA PTRPGNAGTS
GPDKPGPDTS GRDKSGRGKA TGNGSAKGAQ SAKGKRASAK AEPAGTESPR AESPRTGAPG
PKSPKPAPAK APKDGKG
|
|---|
| |