| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0643 |
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| Symbol | |
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| ID | 7172530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 770931 |
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| End bp | 773969 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643539143 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_002435068 |
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| Protein GI | 218885747 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.0165738 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAGAC GCCAATTCCT GAAGATGTCC TGCGTGCTTG GGGCGGGTGT CGCCCTGTGC
GGGCTGGGCG TCGACCTCGT GCCCATCGAG GCGTGGGCAG ACGAGATCAA GAAGATCGAC
CGCCTGAAAA GCGCCAGGCA GACCACGTCT GTGTGCTGCT ACTGTTCGGT GGGGTGCGGC
CTGATCTGCG CCACCGACGA GAAGACCGGC AAGATCATCA ACATCGAGGG CGATCCCGAG
CACCCGGTGA GCGAAGGCTC GCTGTGCGCC AAGGGTGCGG GCATGTTCCA GACCACCGAG
GCCAACGAAC ACCGCCTGAC CAAAGTGCTG TACCGCGCCC CCAACTCGGA CAAGTGGGAA
GAAAAGAGCT GGGACTGGGC CATCGACCGC ATCGCGCGGC TGATGAAGGA AGAGCGCGAC
AAGTCCTTCA TCACCCAGAA CGCGGCGGGA CAGGTGGTCA ACCGGCTGGA AACCCTGGCC
CACATGGGCA GTTCCAACCT GGACAACGAG GAATGCTGGA GCATCACCGC CTGGGCGCGG
TCTCTCGGCC TGGTGTACAT AGATCACCAG GCCCGGGTCT GACACGGCCC CACCGTACCG
GCTCTGGCAG AGTCGTTCGG ACGCGGCGCG ATGACCAATC ACTGGATCGA CATCCAGCAC
AGTGATTGCA TTCTCATCCA GGGCAGCAAC GCTGCCGAAA ACCACCCCAT CTCCTTCAAG
TGGGTGATGC GCGCCAAGGA AAGGGGCGCC AAGCTGATCC ACGTGGACCC GCGCTTCACG
CGGACCTCGT CCAAGGCCGA TTTCTACGCC CCCCTGCGCT CGGGCACGGA CATCGCCTTC
CTTGGCGGGA TGATCAAGTA CATCATCGAC AACAACAGGA TATTCCACGA CTACGTGGTC
AACTACACCA ACGCCCCGTT CCTGGTGGAC GGCAAGTTCG GCTTCAAGGA CGGCCTGTTC
ACCGGCTACG ACGCGGACAA GCGCGGCTAC GACAAGGCCA CCTGGACCTA CCAGAAGGAT
GCCAATGGCA TCATCCTGCG CGACGAGACG CTGAAGAACC CGCGTTGCGT CTACCAGATG
CTGAAGGCGC ACTACGCCCG CTACGACCTG AAGAAGGTCT CTTCCATCAC CGGCACGCCC
GAAAAGGACC TGAAGACCGT GTACGAGATG TTCTCGTCCA CCGGCACCAA GGACCGTGCG
GGCACCGTCA TGTACGCCCT GGGGCAGACC CACCACACCG TGGGGGTGCA GAACATCCGC
GCCCTGGCCA TCGTCCAGCT GCTGCTGGGC AACATCGGGG TGTGCGGCGG CGGCGTCAAC
GCACTGCGCG GCGAACCCAA CGTGCAGGGA TCCACGGACC ACGCCCTGCT GTACCACTAC
CTGCCGGGCT ACCTTTCGGC CCCGCGCACC TCGCAGCAGA CGCTGCAATC GTACATCAAG
AAGATCACCC CCTCGACCAC GGAAGCCAAA TCCGTCAACT GGCAGTCCAA CTACGGCAAG
TACGCGGTAA GCCTGCTGAA GTCGTGGTAC GGCGATGCCG CCACCAAGGA CAACGAGTTC
GGCTACGCCT GGGTGCCCAA GGCCGACGAC GGCAAGGACT ACTCGGTCAT GACCCTGTTC
GACGTGATGT ACGCCGGCAA GATCAAGGGC ATGACCGTGT TCGGCCAGAA CCCCGCGTGC
AGCATCCCCA ACTCGAACAA GGTGCGCGCC GCCTTCGCCA AGCTGGACTG GATGGTGCAC
CTGAACATCT TCGACAACGA GACGGCGTCA TTCTGGAAGG GGCCGGGCAT GGACCCCGCC
AAGGTGAAAA CCGAGGTCTT CCTGCTGCCC GCCTCTGCCT CCGTCGAAAA GGCCGGCAGC
CAGACCAACA GCGGCCGCTG GATACAGTGG CGCTACGAGG CCACCAAGGC TCCCGGCGAC
TGCATCTACG CGGGCGAGGC CATCATCCGC ATCCAAAACA AGCTGAAGGA ACTGTACAGC
AAGGAAGGCG GCACCTTCCC CGACCCCATC CTGAACATGA CCTCCGACGG TCTGGCAGAA
AAGGGCGGCT ACGACGCGGA AAAGGTGGCC AAGCTCATCA ACGGCTACTT CCTTGCCGAC
GTGGAGATAG GCGGCAAGCA GTACAAGAAG GGAGACTGCG TGCCCTCGTT CGCCCTGTTG
CAGGCCGACG GCTCCACCTC GTCGGGCAAC TGGATCTGCG CGGGCAGCTT CAGCCAGGAT
GGCAAGAACC TGATGCAGCG ACGCGGCAAG GCTGACCCCA CGGGCCTTGG CCTGTACCCC
GAATGGTCGT TCGCCTGGCC GGTGAACCGC CGGGTGCTGT ACAACCGCGC CTCGTGCGAC
CCCAGCGGAA AGCCCTACAA CCCCAAGCGC GCCGTGCTGG AATGGAAGGA CGGCAAGTGG
GTGGGCGACG TGCCCGACGG CGCCCCGCCG CCGCTGGCGG CGGAAGGCGG CAAGCTGCCG
TTCATCATGA AGCCCGACGG GGTCAGCTCC CTGTTCGGGC CGGGTCTTGG CGACGGCCCC
TTCCCGGAAC ACTACGAACC GCTGGAAAGC CCGCTGGCCA AGAACCTGAT GTCACCGCAG
CAGAACAACC CCGCCATCCT GCTGTACAAG AGCGACAAGG ACATGGTGGC CAGCGCCGAC
GCGCGCTTCC CCATCGTCAT GACCACCGAC TCGTCCACCG AGCACTGGTG CACCGGCGCC
TTCACCCGCT GGCAATCGTG GCTTACCGAG GCCATGCCCC AGGCATACGT GGAAATGAGC
GAGGAACTGG CCAAGGAAAA GGGCATCAAG AACGGCGACA AGGTGCGCGT GGAATCGGCT
CGCGGCAAGC TGGAGTGCGT GGCCATGGTC ACGCCGCGCT TCCGTCCCTT CCTGGTCAAC
GGCAAGACGC TGCATCAGGT GGGCATGCCT TACAACTACG GCTGGCGCTT CCCCGCCGAC
AACGGCGACA GTGCCAACCT GCTCACTCCC ACGGTGGGCG ACGCCAACGC CATGACGCCG
GAATACAAGG CGTTCATGGT CAACGTGGTC AAGGTATAG
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| Protein sequence | MRRRQFLKMS CVLGAGVALC GLGVDLVPIE AWADEIKKID RLKSARQTTS VCCYCSVGCG
LICATDEKTG KIINIEGDPE HPVSEGSLCA KGAGMFQTTE ANEHRLTKVL YRAPNSDKWE
EKSWDWAIDR IARLMKEERD KSFITQNAAG QVVNRLETLA HMGSSNLDNE ECWSITAWAR
SLGLVYIDHQ ARVUHGPTVP ALAESFGRGA MTNHWIDIQH SDCILIQGSN AAENHPISFK
WVMRAKERGA KLIHVDPRFT RTSSKADFYA PLRSGTDIAF LGGMIKYIID NNRIFHDYVV
NYTNAPFLVD GKFGFKDGLF TGYDADKRGY DKATWTYQKD ANGIILRDET LKNPRCVYQM
LKAHYARYDL KKVSSITGTP EKDLKTVYEM FSSTGTKDRA GTVMYALGQT HHTVGVQNIR
ALAIVQLLLG NIGVCGGGVN ALRGEPNVQG STDHALLYHY LPGYLSAPRT SQQTLQSYIK
KITPSTTEAK SVNWQSNYGK YAVSLLKSWY GDAATKDNEF GYAWVPKADD GKDYSVMTLF
DVMYAGKIKG MTVFGQNPAC SIPNSNKVRA AFAKLDWMVH LNIFDNETAS FWKGPGMDPA
KVKTEVFLLP ASASVEKAGS QTNSGRWIQW RYEATKAPGD CIYAGEAIIR IQNKLKELYS
KEGGTFPDPI LNMTSDGLAE KGGYDAEKVA KLINGYFLAD VEIGGKQYKK GDCVPSFALL
QADGSTSSGN WICAGSFSQD GKNLMQRRGK ADPTGLGLYP EWSFAWPVNR RVLYNRASCD
PSGKPYNPKR AVLEWKDGKW VGDVPDGAPP PLAAEGGKLP FIMKPDGVSS LFGPGLGDGP
FPEHYEPLES PLAKNLMSPQ QNNPAILLYK SDKDMVASAD ARFPIVMTTD SSTEHWCTGA
FTRWQSWLTE AMPQAYVEMS EELAKEKGIK NGDKVRVESA RGKLECVAMV TPRFRPFLVN
GKTLHQVGMP YNYGWRFPAD NGDSANLLTP TVGDANAMTP EYKAFMVNVV KV
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