| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0561 |
|---|
| Symbol | dapF |
|---|
| ID | 7172448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 660511 |
|---|
| End bp | 661359 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643539061 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_002434986 |
|---|
| Protein GI | 218885665 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.00183817 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCA AGGCACGCAC CGTACCCATC CACAAGCTGC ATGGGTGCGG TAACGACTTC
GTATTCATCG ACAACCGGGC ACTGGGCCTG CCCGTCGCGG CCATGCCCGA CTGGGCCCGC
TCCGTGTGCC GCCGCGCTTT CGGCGTGGGC GCCGACGGCC TCGTCTTTCT GGATGAAACG
CCGAAAGACC GCGAAGGCGA CTACATCTGG CACTTCTACA ATGCCGACGG CTCGCGCGCC
GAAATGTGCG GCAACGCTTC GCGCTGCGCC GCGCTGCTGG CCGTGGAACT GGGCTTTGCC
GGGCCGAAGC ACGTCTTCGG CACCGATGCC GGGCTCATCC GCGCCGAGGC CGACGTGGCC
GCCGGAATGG CCAAGGTGGA ACTGACCCCG CCGCGCGACC TGACCCTGGG CATCGAACTG
GACCTTGGCG AAGGCCGCGA CATGGTGCAC TTCGTGAACA CCGGGGTACC CCATGCCGTG
GTGTTCAAAC GCGACGCCTC GACCGTGGAC GTGCGCACAC TGGGCGCGGC GCTGCGCCGC
CACGCGCACT TCGCGCCTGC GGGCACCAAC GCCAACTTCG CGCAGGTCAT CGACCGCAGG
AACATCCACC TGCGAACCTT CGAACGCGGC GTGGAGGACG AAACCTACGC TTGCGGCACA
GGGGCGGCGG CGGGCGCGTT CATCGCGCAT GCGCTGGGGC TTGCTGAATC CACGGTGAAT
GTCAGGAGCT CCGGCGGCGA GATCCTTGGC ATATCCATTG AAGGCGGCTC GGTGTTCCTT
TCCGGCAAGG CCGTGCGCGT CTTCTCTGGC GAGATGTTCC TGGAAGGGCT GGGGCTGGCC
CTGGCGTAA
|
|---|
| Protein sequence | MSGKARTVPI HKLHGCGNDF VFIDNRALGL PVAAMPDWAR SVCRRAFGVG ADGLVFLDET
PKDREGDYIW HFYNADGSRA EMCGNASRCA ALLAVELGFA GPKHVFGTDA GLIRAEADVA
AGMAKVELTP PRDLTLGIEL DLGEGRDMVH FVNTGVPHAV VFKRDASTVD VRTLGAALRR
HAHFAPAGTN ANFAQVIDRR NIHLRTFERG VEDETYACGT GAAAGAFIAH ALGLAESTVN
VRSSGGEILG ISIEGGSVFL SGKAVRVFSG EMFLEGLGLA LA
|
|---|
| |