Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0561 |
Symbol | dapF |
ID | 7172448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 660511 |
End bp | 661359 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643539061 |
Product | diaminopimelate epimerase |
Protein accession | YP_002434986 |
Protein GI | 218885665 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.00183817 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGGCA AGGCACGCAC CGTACCCATC CACAAGCTGC ATGGGTGCGG TAACGACTTC GTATTCATCG ACAACCGGGC ACTGGGCCTG CCCGTCGCGG CCATGCCCGA CTGGGCCCGC TCCGTGTGCC GCCGCGCTTT CGGCGTGGGC GCCGACGGCC TCGTCTTTCT GGATGAAACG CCGAAAGACC GCGAAGGCGA CTACATCTGG CACTTCTACA ATGCCGACGG CTCGCGCGCC GAAATGTGCG GCAACGCTTC GCGCTGCGCC GCGCTGCTGG CCGTGGAACT GGGCTTTGCC GGGCCGAAGC ACGTCTTCGG CACCGATGCC GGGCTCATCC GCGCCGAGGC CGACGTGGCC GCCGGAATGG CCAAGGTGGA ACTGACCCCG CCGCGCGACC TGACCCTGGG CATCGAACTG GACCTTGGCG AAGGCCGCGA CATGGTGCAC TTCGTGAACA CCGGGGTACC CCATGCCGTG GTGTTCAAAC GCGACGCCTC GACCGTGGAC GTGCGCACAC TGGGCGCGGC GCTGCGCCGC CACGCGCACT TCGCGCCTGC GGGCACCAAC GCCAACTTCG CGCAGGTCAT CGACCGCAGG AACATCCACC TGCGAACCTT CGAACGCGGC GTGGAGGACG AAACCTACGC TTGCGGCACA GGGGCGGCGG CGGGCGCGTT CATCGCGCAT GCGCTGGGGC TTGCTGAATC CACGGTGAAT GTCAGGAGCT CCGGCGGCGA GATCCTTGGC ATATCCATTG AAGGCGGCTC GGTGTTCCTT TCCGGCAAGG CCGTGCGCGT CTTCTCTGGC GAGATGTTCC TGGAAGGGCT GGGGCTGGCC CTGGCGTAA
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Protein sequence | MSGKARTVPI HKLHGCGNDF VFIDNRALGL PVAAMPDWAR SVCRRAFGVG ADGLVFLDET PKDREGDYIW HFYNADGSRA EMCGNASRCA ALLAVELGFA GPKHVFGTDA GLIRAEADVA AGMAKVELTP PRDLTLGIEL DLGEGRDMVH FVNTGVPHAV VFKRDASTVD VRTLGAALRR HAHFAPAGTN ANFAQVIDRR NIHLRTFERG VEDETYACGT GAAAGAFIAH ALGLAESTVN VRSSGGEILG ISIEGGSVFL SGKAVRVFSG EMFLEGLGLA LA
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