| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0494 |
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| Symbol | |
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| ID | 7172381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 580069 |
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| End bp | 581841 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643538994 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_002434919 |
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| Protein GI | 218885598 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.00018772 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGTAACA TCAAGGATAT TCAGCAGATC AAGTCGCTCA TCGCCAAAGG CAAGGTAAGC
GGCTTTCTGA CCTTCGACGA GGTCAACAAG GCCCTGCCGG CAGAGGTCAA CACGCCCGAG
CAGATCGAGG AGATCATCGG TATCTTCGAC CAGCTGGAGA TCGCCATTGT CGATACCGAG
AAGGACGGCA AGAAGATCTC CGTGTCGCCC GGCGAGTCGG AAGAGGAACC TTCCGGCGAA
CCGGGGCTGG ACCTGGTGGA GGACGAGGAG TCTGCGGACT ATTCGTCGCG CTCCACCGAT
CCGGTGCGCA TGTACCTGCG CGAAATGGGC GCCGTGCCGC TGCTGGACCG CGACGGCGAA
GTGCAGATCG CCAAGAAGAT CGAACTCGGC GAGCAGGACG TGCTGTACGC CCTGGTGGAA
GTGCCGGTGG CGGTCGAGGA GCTGATCAAC GTCGGCGAAG ATCTGAAGCA GAACCGCATC
AAGCTGAAGG ACGTCGTCAA GACCATAGAG GAAGACGACC CCAGCGAAGA CGAAATGAAC
CAGCGTTCGC GGGTCATCCT GCTGCTGGAC GAAATCAAGC ATACCTACAA GAAGAAGCGC
AAGGTCTACG CCAAGCTGGA CGACTGCTGC ACCCTGGAAC GCCGGGTGAC CGCCATCCAG
AAGGAAATCC TCGGTTTCAA GGAAGACATC GTCAACCGTC TGCGTGACAT CAAGCTGGAA
AAGACCCTCA TCGACCGGAT AATCGAGACG GTGGAAGACT ACGTGCGGCA GATGCACAAC
TGCCAGCGCG ACCTTTCCGC CTACATCCTG TCCACGGGCA AGACCCAGGT CGAGATCCAG
GACATCTTCC GCATGCTGGA AGCGCGCGAG ATGAACCCCG TGGCCGCTTC CGCGGCGCTG
GGCATGACGG TGGAAGAACT GTTCTCGTTC AAGGAAATGA TCATCGGCAA GATCGAGATC
CTGAACCGGC TGCAGGACAA GTGCTGCCAC AACGTGACGG ACCTCGAGGA AGTGCTGTGG
CGCATCAAGC GCGGCAACAC CCACGCCATG CGTGCCAAGC AGGAGCTGAT CCGCTCCAAC
CTGCGTCTGG TGGTCAGCAT TGCGAAAAAG TACACCAACC GCGGCCTGCA GTTCCTGGAC
CTGATCCAGG AAGGCAACAT CGGCCTGATG AAGGCCGTGG ACAAGTTCGA ATACCAGCGC
GGCTACAAGT TCTCCACGTA CGCCACGTGG TGGATACGCC AGGCCATCAC CCGCGCCATT
GCCGATCAGG CCCGCACCAT CCGCATTCCG GTGCACATGA TCGAAACCAT CAACAAGCTC
ATCCGCACCT CCCGCTACCT CGTGCAGGAA CTGGGGCGCG ACCCCACCCC CGAGGAAATC
GCCGAGCGCA TGGACTACCC CATCGACAAG GTGAAGAAGG TGCTGAAGAT CGCCAAGGAA
CCCATCTCGC TCGAAACGCC CATCGGCGAC GAGGAAGATT CCAGCCTCGG CGACTTCATC
GAGGACAAGA AGGCCGTGGC CCCGGCGGAA GAGGTGGTCA ACACCAAGCT GTCGGAGCAG
ATCGCCTCCG TCCTGGCCGA CCTTACCCCG CGCGAGGAGC AGGTGCTGCG CAAGCGCTTC
GGCATCGGCG AAAAGTCGGA CCACACCCTC GAGGAAGTGG GCAAGCTGTT CAACGTTACC
CGCGAGCGCA TCCGGCAGAT CGAGGCCAAG GCGCTACGCA AGCTGCGCCA CCCCGTGCGC
AGCCAGATGT TGCGTTCCTA CTACGAAAGC TAG
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| Protein sequence | MGNIKDIQQI KSLIAKGKVS GFLTFDEVNK ALPAEVNTPE QIEEIIGIFD QLEIAIVDTE
KDGKKISVSP GESEEEPSGE PGLDLVEDEE SADYSSRSTD PVRMYLREMG AVPLLDRDGE
VQIAKKIELG EQDVLYALVE VPVAVEELIN VGEDLKQNRI KLKDVVKTIE EDDPSEDEMN
QRSRVILLLD EIKHTYKKKR KVYAKLDDCC TLERRVTAIQ KEILGFKEDI VNRLRDIKLE
KTLIDRIIET VEDYVRQMHN CQRDLSAYIL STGKTQVEIQ DIFRMLEARE MNPVAASAAL
GMTVEELFSF KEMIIGKIEI LNRLQDKCCH NVTDLEEVLW RIKRGNTHAM RAKQELIRSN
LRLVVSIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYQR GYKFSTYATW WIRQAITRAI
ADQARTIRIP VHMIETINKL IRTSRYLVQE LGRDPTPEEI AERMDYPIDK VKKVLKIAKE
PISLETPIGD EEDSSLGDFI EDKKAVAPAE EVVNTKLSEQ IASVLADLTP REEQVLRKRF
GIGEKSDHTL EEVGKLFNVT RERIRQIEAK ALRKLRHPVR SQMLRSYYES
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