Gene DvMF_0491 details

Gene Information

• Locus tag: DvMF_0491
• Symbol: rho
• ID: 7172378
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: +
• Start bp: 575162
• End bp: 576412
• Gene Length: 1251 bp
• Protein Length: 416 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643538991
• Product: transcription termination factor Rho
• Protein accession: YP_002434916
• Protein GI: 218885595
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 0.000212536
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAATCTTT CGGAACTCAA GATCAAGAGC ATGAGCGAGC TCATGGAGCT TGCCGAGCAA 
TACAACGTCG AAGGCGCCAG CGGCATGCGC AAGCAGGAGC TGATCTTCGC CCTGCTCCAG 
GCCTGTGCCT CGCAGAACGG CGCCATCTAC GGCGACGGCG TGCTGGAGAT ACTGCCCGAC 
GGTTTCGGCT TTCTGCGGTC GCCGCTGTGC AGCTACATGC CCGGCCCCGA CGACATCTAT 
GTGTCGCCGT CGCAGATTCG CCGCTTCAAC CTGCGCAAGG GTGACGTTGT TTCCGGCCAG 
ATACGCCCGC CCAAGGAAGG CGAACGCTAC TTCGCCCTGC TGAAGGTGAC CGAGATCGGC 
TTCGAGCCGC CGGAAAACGC CAAGAATCTC GTCCTGTTCG ACAACCTGAC GCCCATCTAC 
CCCGACCGCC AGTTCATCAT GGAGAACGGG GACAAGAACT ACTCCAGCCG CGTCATAGAC 
ATGATGGCCC CCGTGGGCCG CGGCCAGCGC GGCCTGATCG TGGCGCCCCC CCGCACCGGC 
AAGACCATCC TGCTCCAGAC CATCGCCAAC TCCATCAACG CCAACCATCC GGATGCGTAC 
CTCATCGTGC TGCTCATCGA CGAGCGGCCC GAGGAAGTGA CCGACATGGA GCGCACGGTG 
AAGAACGCCG AAGTGGTCAG CTCCACCTTC GACGAGCCGC CGCAGCGCCA CGTGCAGGTC 
TGCGAAATGG TGCTGGAAAA GGCCAAGCGC CTGGTGGAAC GCAAGCGCGA CGTGGTCATC 
CTGCTCGACT CCATCACCCG CCTGGGCCGT GCGTACAACG CCGTCACCCC GTCCTCGGGC 
CGCGTGCTGT CCGGCGGTCT CGACGCCAAC GCCCTGCAAC GCCCCAAGCG CTTCTTCGGC 
GCGGCGCGCA ACATCGAGGA AGGCGGCAGC CTGACCATCA TCGCCACCGC CCTCATCGAC 
ACCGGCTCGC GCATGGACGA AGTGATCTTC GAAGAGTTCA AGGGCACCGG CAACATGGAA 
ATCTACCTGG AACGCCACCT TGCCGAAAAG CGCGTGTTCC CGGCTATCGA CATCAACCGC 
ACCGGCACCC GCAAGGAAGA CCTGCTACTG TCGGACGAGG TGCTCAACCG CGTGTGGATC 
CTGCGCAAGA TTCTGGCGCC CATGTCGCCC ATCGACAGCA TGGAATTCCT GCTGGACAAG 
ATGCGCGCCA CCAAGAGCAA CCGCGAATTC CTGAACGTGA TGAACAAGTA A 

 

Protein sequence

MNLSELKIKS MSELMELAEQ YNVEGASGMR KQELIFALLQ ACASQNGAIY GDGVLEILPD 
GFGFLRSPLC SYMPGPDDIY VSPSQIRRFN LRKGDVVSGQ IRPPKEGERY FALLKVTEIG 
FEPPENAKNL VLFDNLTPIY PDRQFIMENG DKNYSSRVID MMAPVGRGQR GLIVAPPRTG 
KTILLQTIAN SINANHPDAY LIVLLIDERP EEVTDMERTV KNAEVVSSTF DEPPQRHVQV 
CEMVLEKAKR LVERKRDVVI LLDSITRLGR AYNAVTPSSG RVLSGGLDAN ALQRPKRFFG 
AARNIEEGGS LTIIATALID TGSRMDEVIF EEFKGTGNME IYLERHLAEK RVFPAIDINR 
TGTRKEDLLL SDEVLNRVWI LRKILAPMSP IDSMEFLLDK MRATKSNREF LNVMNK