| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0478 |
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| Symbol | |
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| ID | 7172364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 561797 |
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| End bp | 563596 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643538977 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002434903 |
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| Protein GI | 218885582 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.0259982 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCCA TACTCCGCTT TTTCCCCCGC CGCAGCGCCG CGGTCGCACA GGCGGCCAGC
CGGCTGCCGC GCAGCCGCGT GTCCGCCCCG GCCCCCGGAC GTTCGCGCGT GGGGGCGCTT
TCCCGCGCCG CCGCGCTGCT GGCGGCGGTC TGTCTTGCCT CCGGCGTATC CGGCTGCGCC
ACGCGCCAGC CCGCGCCGGA CCAGCCCGTC GCCCCCGTGG AATGGCAGCT GTCGCCCGAT
GCGGCCACCA CCTACTACTA TCTGCTCCTT GAGCAGGCAG GCCGCAACGG CAACATGCGC
GATGCGCTGA CGGCCATCGA GCAGTTGGTG GCCCTCGACC CGTCGCCAAG GGTGTTCATC
GACGGCGGCT CGTTCCTGCT TTCGCGCAAG GAAGCGACCC TGGCCCGCCA GGTGCTGCAG
GAAGGCGTGA CCCGCTACCC CGACGACCTG GACATCACCC TGCTGCTGGT GGAAACCTAC
CTTGAGGAAA ATCGCACCGG CGATGCGCTG TACACCCTGC GCAGCTTCGT CGGCGCCCAT
GGCGAAGACG AACAGGCCCG CCAGGAACTG GCCCTGCTGC TGGTGAAGAC CCGCAACTTC
GCCGAGGCGG ACAAGCTGCT CTCCGGCATT GCCGAGCGCA ACCGTACCCC CGTGCTGCGT
TACTACCACG CTCGCGCCCT GGTGGGGCTG AACCGCCATT CCGAGGCGCT GGGCCAGTTG
CGCAAGGCCG TCAAGGCCGC GCCCGACTTT CTGGAAGCCT GGGCGGAACT GGCCTTCATC
TACGAGTTGC GCAAGGACTA CGTGGAAGCC GAGCGCACCT ACGAACAGAT CATCACCCTG
GACGAAGGCA ACCAGGACGT GTGGCTGCGG CTCATCGCCA TCAGCCTGAA GCTGAACAAC
CCGGCCAAGG CCTACGAACT GGCTCGACAG GGGCCGGAAA CCTTCGGCTT TCTGCTAACG
GCGGCCACCC TGTTCCTGGA AGAAAAGTTC TACGAACAGG CCGACGCCCT GCTTACCGTG
GTCAAGGACA CCCCCGGCGC GCCCGAAGAG GTGTACTTCT ACCTGGCCGT GCTATCCTTC
GAGGGCAAGC GCGACCCGGC AGGGGCCCTG CACTGGCTGT CGGAAATCAC CCCGTCCAAC
AAGTACCACG ACCGCGCCCT GCGCCTGAAA AGCCAGCTGC AGTACGAAAG CGGCGACCTT
ACCGGGGCGC TGGCCACGCT GAAGGAAGGA CAGAAGACCT ACCCCGGCCA GAAGGAATTC
TGGCAGATGG AGGCCCAGCT GTACCTGAAC AGCGACAAGC CGGAAGCGGC CCTGGCCGTC
ATGGACGAGG CGCGCAAGTT CTGGCCCGAC GACGCCGAAA TCGCCTTCAT GCGCGGCATC
ATCCTGGACG AGCGCGGCCA GAAGGCCGAG GCGTTCACCA TGATGGAGCA GGTCATCGCC
GATCACCCGC GCCACGCCCA GGCCCTGAAC TACGTGGGCT ACACCCTGGC GGAACAGGGG
CGCGACCTGG ACCGCGCGCT GGAACTTATC ACCCGTGCCC TTGAAGAATC GCCCGACAGT
ACCTACATCA TCGATTCGCT GGCCTGGACG CACTACCGCC GGGGCGAGTT GAACGAGGCG
TGGCAGGCCG TCAGCCGCGC CGTGGAACTG GGCGCCAGCG ACCCGACCAT CTGGGAACAC
TACGGCGACA TCGCCGCCGC CCTCGGCAAG AAGGCAGAGG CGCGCAAGGG GTACCGCAAG
GCCCTGGAAA TGTCGCCCGC CAACGCGGCG GACGTTACCG CCAAGCTCAA GAACCTGTGA
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| Protein sequence | MPSILRFFPR RSAAVAQAAS RLPRSRVSAP APGRSRVGAL SRAAALLAAV CLASGVSGCA
TRQPAPDQPV APVEWQLSPD AATTYYYLLL EQAGRNGNMR DALTAIEQLV ALDPSPRVFI
DGGSFLLSRK EATLARQVLQ EGVTRYPDDL DITLLLVETY LEENRTGDAL YTLRSFVGAH
GEDEQARQEL ALLLVKTRNF AEADKLLSGI AERNRTPVLR YYHARALVGL NRHSEALGQL
RKAVKAAPDF LEAWAELAFI YELRKDYVEA ERTYEQIITL DEGNQDVWLR LIAISLKLNN
PAKAYELARQ GPETFGFLLT AATLFLEEKF YEQADALLTV VKDTPGAPEE VYFYLAVLSF
EGKRDPAGAL HWLSEITPSN KYHDRALRLK SQLQYESGDL TGALATLKEG QKTYPGQKEF
WQMEAQLYLN SDKPEAALAV MDEARKFWPD DAEIAFMRGI ILDERGQKAE AFTMMEQVIA
DHPRHAQALN YVGYTLAEQG RDLDRALELI TRALEESPDS TYIIDSLAWT HYRRGELNEA
WQAVSRAVEL GASDPTIWEH YGDIAAALGK KAEARKGYRK ALEMSPANAA DVTAKLKNL
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