| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0308 |
|---|
| Symbol | |
|---|
| ID | 7172190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 355405 |
|---|
| End bp | 356850 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643538804 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_002434733 |
|---|
| Protein GI | 218885412 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 0.582048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCT CACTTTCCCG TACCCTCGCC GCCGCTCTGG CGCTGTGCCT TGTGCTTGCA
GCAGCCGCAC AGGCCGCGCC CATGCTGCCC GACTTTCGCG AACTGGCGAA GCAGTCGGGC
AATGCCGTGG TCAACATCAG CACCGAAAAA ACAGTGCAGG CCGCGGAAAA TCCGTTCAAC
GAACTGTTCC GCAACATGCC GCCCGGCACC CCCTTCGACA AGTTCTTCGA CCAGTTCGAA
AAATTCCATG GCCGCCAGCA GCGCCCGCAG AAGCAGCGTT CGCTGGGTTC CGGCTTCATC
ATTTCCACGG ACGGCTACAT CGTCACCAAC AACCACGTGG TTGCTGAGGC GGACGTGATC
CGCGTGAACC TGCAAGGCGC CAGCGGCAAG TCCAACTCGT ACGTGGCCAA CGTCATCGGC
ACCGACGAGG AGACCGACCT CGCCCTGCTG AAGATCAACG CGGGCAACAC CTTGCCGGTG
CTGCCCTTCG GCGATTCCGA CAAGCTGGAA GTGGGCGAAT GGCTGCTGGC CATCGGCAAC
CCCTTCGGCC TCGACCACTC GGTGACCGCG GGCATACTGA GCGCCAAGGG GCGAGACATC
CGCTCCGGCC CGTTCGACAA TTTCCTGCAG ACCGACGCCT CCATCAACCC CGGCAACAGC
GGCGGCCCGC TGTTGAACAT GAATGGCCAG GTCATCGGCA TCAACACCGC CATCATCGCC
TCCGGCCAGG GCATCGGCTT TGCCATTCCC AGCAACATGG CCGAGCGGGT CATCGCCCAG
CTGCGCGCCG AGGGCAAGGT GCGGCGCGGC TGGATCGGCG TGACCATCCA GGACGTGGAC
GAGGCAACCG CACGTGCCCT GGGCCTTGGC GAGCCGCGCG GCGCGCTGGT GGGCTCGGTG
ATGCCCGGCG AACCCGCCGA CAAGGCGGGG CTGAAGCCCG GCGACATCGT GCTGAAGGTT
GAAGGCGACG ACGTGTCCGA TTCCAGCCAA CTGCTGCGCC GCATCGCCGC GCTGAAGCCC
GGCGACACCA CCAAGCTGAC CCTGTGGCGC AACGGCCAGA CCAAGACCGT CAACCTTACC
CTTGGCGAAC GCACGGCGGA ACACCTGACC GCCCAGCGCG GCGATGCCGC CCCGGAAAAG
AGCGGCAAGG AACAGGCTTC CGCCGGGCTT GGCATGAGCG TGCGCCCCGT CAGCGCGGAA
GACGCCCGCA ACCTGAAGCT GGAAGAGGCG CGCGGCCTGC TGGTGGTTTC CGTCGAGGGC
GGCAAGCCCG CGGCCGAGGC GGACATCCGC GCCGGTGACA TCATCCTGCT GGCCAACCTG
AAGCCGGTGA ACACCGCTGC CGACCTCACC AAGGTCATCG AGCAGGACGG CAAGAAGCGC
GGCGCGGTGA TGCTGCAACT GATGCGCCGC GGCCAGACCT TCTTCCGCAC CGTGCCCCTG
GAATAG
|
|---|
| Protein sequence | MARSLSRTLA AALALCLVLA AAAQAAPMLP DFRELAKQSG NAVVNISTEK TVQAAENPFN
ELFRNMPPGT PFDKFFDQFE KFHGRQQRPQ KQRSLGSGFI ISTDGYIVTN NHVVAEADVI
RVNLQGASGK SNSYVANVIG TDEETDLALL KINAGNTLPV LPFGDSDKLE VGEWLLAIGN
PFGLDHSVTA GILSAKGRDI RSGPFDNFLQ TDASINPGNS GGPLLNMNGQ VIGINTAIIA
SGQGIGFAIP SNMAERVIAQ LRAEGKVRRG WIGVTIQDVD EATARALGLG EPRGALVGSV
MPGEPADKAG LKPGDIVLKV EGDDVSDSSQ LLRRIAALKP GDTTKLTLWR NGQTKTVNLT
LGERTAEHLT AQRGDAAPEK SGKEQASAGL GMSVRPVSAE DARNLKLEEA RGLLVVSVEG
GKPAAEADIR AGDIILLANL KPVNTAADLT KVIEQDGKKR GAVMLQLMRR GQTFFRTVPL
E
|
|---|
| |