Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0211 |
Symbol | |
ID | 7172091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 232341 |
End bp | 235571 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643538709 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002434639 |
Protein GI | 218885318 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.0293553 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGCGTT CGCGCCTGTT CGGGCGTACC CTGCGGGGAC TCATCGTGCT GTTCGGGGTA TACGCCGCCG TCACGTCCAT CTATTCCGGC TGGACCCTGC ACACCCTGCT GATCCGTGAA TACGAAAGCA AGGCGCTGGC CATCGCCCGC GCCATCGCCG GGGCGGACCT GGAAAGCCTG ATCGGGCGCG ACGTGACCAC CGTGCAGTCG CGCATCGACC AGTTTCTGGG CATCGACGGG GTGTCCTACG TGCTGGTGGC GGACGGCCGG GGTGAAACCG TGGCCCACAC CTTCGTGCCC GTGGTGCCGG AGCCGGTGCG CGAACTGGTG GCCTCGCTGG CGGGTGTGCG CATGAACGAG GTCACCGTGC TGCGCGATCG GCTGTCCCTG CCCCGCCCCC AGGGCGGTGC GTCGGGCGGG GGCGGGCGCG AGGTGATGCA CGTGACCATG CCGGTCTTTG CTGGCGTGGG CGGCTTTGTC CACATCGGCA TGGACCGGGG GCGCATCAGC GACTACATCG ATGGCGCCAT CCTGCGCCAG CAGGGGCTGG GGTTGGCCTT CTTCGCCGCG TGCGCCGTGG GGGCATGGAT GCTGCTGTAT TCCATCTCGC GGCCGCTCAT GCGCCTGACC GACCAGGCCC GCCGGGTGGC TGTGCACGAT TTTTCGGCCC CGCCGGACCT GCCCGCCATG AAGGCCGACG ACGAGATCGG CGACCTTTCC CGCGCCATGC ACACCATGTC CCGCGACCTG GCCGGGCTGG TGGAGGGGCT GGAGGATTCC GTGCGCCAGG CCACGGCGGA ACTGGGCGGC GCGCTGGAAC AGCTTTCCAC CATCGTGGCG GGCATGGCCG ACGGCCTGCT GGTCACCGAT CCGCAGGGCC TGGTGCTGCG CAGCAACGCG GCCCTGTGCG AGATGTTCGG CCTGGACGCA GACCCCGACG GCAGGTCGGT GTGCGAGGTG TTCGGCTTCG TGGCGCCCGC CGTGCGGATG GTGGGGGACG GCATTCACGA GTTTGCCTTC GAGACGGAGG ACGGCGAGGA CATCGTGCCC GAGGCCGTGG TGCGGGACAA CGCGGCGCTG CTGGCCTTCC TGGACGGGGC CGACGTGCCC GGCCAGCCCA TGACCGGCGT GTCCTGCACG CTGCCCGGAC CGTCCGGGGC GTTGGCCGCC AGGCCAGTCA CCGGGCCAGA TCAGGGCCTG CCGCAGGGCG CGCCATGCCC GTCGGGTACC GGCACGGCCC TGCGTTCGGG CGAGGTAGCC GCCGTGCGGC GCGACGGCAC ACCCTGCTGG GTGGAGCTTT CGCTGGTGCG GCGGCAGGTG ATGGGCACCA CCTACGGCAT CTGTCTGGTG CGCGACGTGA CCGAGCGCCG CCGCGCCCAG GAAGCGTTGC ACCGCGCCCA CGGCATGCTG GAGCGCAAGG TGCGCGAGCG CACCCGCGAA CTGAGCCGCG CCAATGCCCA ACTGATGCTG GAAAACGCCG AGCGTCGCAC CGTGGAGCAG GCCCTGCGCC GGGCCGAGGC GCGCTTCCGG GGCATTTTCG AGCATGCCCT GGAAGGCATC TTCCAGAGCA CGCCGGAGGG GCGCTTTCTG AGCGTCAACC CGGCCATGGC CCGCATTCTG GGCTACGAAG GGGTGCAGGA ACTGCTGGAG GGCGTGGAAT CCATCGGGGA CGGGGTCTAC GCGGACCCGG CCCGGCGCGA CGAGTTCGTT GCCCGCATGG AGGAGCATGG CCAGGTCAAC GCCTTCGAGT TCCGGGGGCG GCGCAAGGGG GGCGACCTGA TCTGGCTGTC GGTGAATGCC CGGCGGGTGC CGGGGGCCGA CGGGGCCACC ATGTACTACG AGGGCTTTCT CGAAGACGTC ACCATGGGCC ACGAAAGCCG CGAGCGGCTG GAACATCAGG CCTTCCACGA CCCGCTCACC GGGCTGCCCA ACCGCGTGCT GTTCCACGAC CGGCTGCAAA TGGCCCTGAA GCGCGCCGCG CGCCGCCGCA ACTACACCTT TGCCATGCTG TACCTGGACC TTGACCGGTT CAAGGTCATC AACGACAGCC TTGGCCACGA CGTGGGCGAC GCATTGCTGA AGGTGGTGTC CGCCAAGCTG CGCGAATGCG TGCGCGACGT GGATACCGTG GCCCGCTTCG GCGGCGACGA GTTCGGCGTG CTGCTGGAGG AAACCCCCAC GCGCGGCACG GCGGTGCGCG TGGCCCGGCG CATCCGGGCG CACCTGGCGG AGCCGGTGCG CATCGGCCCG CACGAGGTGT TCACCACGGC CAGCATCGGC ATCGTGCTGC GCACCGACCA GTACTCCACG CCGGAAGAAC TGGTGCGCGA CGCGGACACC GCCATGTACC GCGCGAAAGA GCAGGGCCAG TCGCGCTTCA AGGTGTTCAA CAAGCGCATG CGCGAAGAGG CGCTGCGCCT GCTGACCATA GAAACCGACC TGCGCCGCGC CGTGGAGCGG CAGGAAATGC GCCTGCATTA CCAGCCCGTG GTGGCGCTGG AAGACGGCGG CCTGCACGGG GTGGAGGCGC TGCTGCGCTG GACGCGTACC GAAGGGGGCG ACATCTCGCC CGCCGAGTTC GTGCCCGTGG CCGAGGACAC CGGGCTTATC ACCTCCATCG GGGCTTTCGC GCTGGAAGAG GTGTGCCTGC AACTGCGCCG CTGGAACGAA GCGGGACTGC CGCCGCCGGG TGTGGTGCAC GTGAACATTT CTGGCCGCCA GTTCATGCAG CCGGGCCTGC CCCACGCCGT GGAGATGCTG CTGGAACGCA CCGGCACCGA CCCGCGCTCA CTGCGCTTCG AGGTGACCGA AAGCGTGCTG ATGCGCCACG GCAGCCAGGC CATCACGGTC ATGGCCCAAC TGCGCGATCT GGGCATCCGG CTGTGCCTGG ACGACTTCGG CACCGGCTAT TCCTCGCTGG GCTACCTGAA GCGGCTGCCG GTGGATTCCA TCAAGATCGA CCGCAGCTTC GTGGCCGGTC TGGAGCACGA CCGCGACGGG CAGGCCATCG TGCGCTCCAT CGTCTCGCTG GGGCTGCACC TGGGGCTGGA GATCGTGGCC GAAGGGGTGG AAACGCCCAC TCAGGCGGAA ATGCTGGCTT CGCTGGGTTG CCGGTATGCC CAGGGTTTTC TGTACGCGCC GCCTGTTTCG GCGGACGATC TTGCCGCCAT GCTGGACGCT ACGCCGTTTC CGTCCACCGG GGGTGGTGTT TTCGTGGGTG GTTCGGTATA G
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Protein sequence | MRRSRLFGRT LRGLIVLFGV YAAVTSIYSG WTLHTLLIRE YESKALAIAR AIAGADLESL IGRDVTTVQS RIDQFLGIDG VSYVLVADGR GETVAHTFVP VVPEPVRELV ASLAGVRMNE VTVLRDRLSL PRPQGGASGG GGREVMHVTM PVFAGVGGFV HIGMDRGRIS DYIDGAILRQ QGLGLAFFAA CAVGAWMLLY SISRPLMRLT DQARRVAVHD FSAPPDLPAM KADDEIGDLS RAMHTMSRDL AGLVEGLEDS VRQATAELGG ALEQLSTIVA GMADGLLVTD PQGLVLRSNA ALCEMFGLDA DPDGRSVCEV FGFVAPAVRM VGDGIHEFAF ETEDGEDIVP EAVVRDNAAL LAFLDGADVP GQPMTGVSCT LPGPSGALAA RPVTGPDQGL PQGAPCPSGT GTALRSGEVA AVRRDGTPCW VELSLVRRQV MGTTYGICLV RDVTERRRAQ EALHRAHGML ERKVRERTRE LSRANAQLML ENAERRTVEQ ALRRAEARFR GIFEHALEGI FQSTPEGRFL SVNPAMARIL GYEGVQELLE GVESIGDGVY ADPARRDEFV ARMEEHGQVN AFEFRGRRKG GDLIWLSVNA RRVPGADGAT MYYEGFLEDV TMGHESRERL EHQAFHDPLT GLPNRVLFHD RLQMALKRAA RRRNYTFAML YLDLDRFKVI NDSLGHDVGD ALLKVVSAKL RECVRDVDTV ARFGGDEFGV LLEETPTRGT AVRVARRIRA HLAEPVRIGP HEVFTTASIG IVLRTDQYST PEELVRDADT AMYRAKEQGQ SRFKVFNKRM REEALRLLTI ETDLRRAVER QEMRLHYQPV VALEDGGLHG VEALLRWTRT EGGDISPAEF VPVAEDTGLI TSIGAFALEE VCLQLRRWNE AGLPPPGVVH VNISGRQFMQ PGLPHAVEML LERTGTDPRS LRFEVTESVL MRHGSQAITV MAQLRDLGIR LCLDDFGTGY SSLGYLKRLP VDSIKIDRSF VAGLEHDRDG QAIVRSIVSL GLHLGLEIVA EGVETPTQAE MLASLGCRYA QGFLYAPPVS ADDLAAMLDA TPFPSTGGGV FVGGSV
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