Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0177 |
Symbol | |
ID | 7172053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 193386 |
End bp | 194675 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643538671 |
Product | Lytic transglycosylase catalytic |
Protein accession | YP_002434605 |
Protein GI | 218885284 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.00119021 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGCGCA AACGCACGGC ATACGGCGGC CTGATGGCCG CGGCTGCACT GGCGGTGGGC GTGCTCGGCC TGGTGGCCGG GTTCGTGCCC GACGCGGGCA GCCCGTTCGT GCGTGCACCG CTGAGCGACC GGGTGCTGCG CGCCAGGCCC GCCGTGGAAC GTCCGGTGGT GGAGGGCGAG CAGTGGCGCA TGCGCGCCGC CGTGTCCCGT CCCGACGATG CGTTCTCCAT GGTGGATGAC GGGGTGTTTG CCGTGACCGG CAGCGGGGTA TCTTCCGATA TCACGGCGGT CGTGACGCAG GCGGTGGTTC CGCCAGCCTC GGTGCACGCG TCTGTGGCAG CCTCGCTGGG CGTGTCCGGT GTGTCTGGCG TGTCTGGCCG CACGGCGGAA GAATTCTCCC CCTCCCGTTC CGTTCCCTCG GTCAGCTTTG CCGGTGGCGG CGTGGCCGTG CCCACCGTGG ACGGGCACCG TCCCGTGGAC GCCATGGCCG ACGCCTCGCC CATGATCCTG CTGGGGCTGG ACCCCTTGCG TGTGGACGGG GGCCGTGCGG GCGACCCCAC CCTTGTGGCC GAACCCGCCT TCTACGGCGA GGCCCTGGAC CAGGCCGGGC GGCCGCTGCG CTGGACGCGC GGCGAAACGT CGCGCCTGCT GGCCAGGGAG TGTGCGGCCA CCCGGCGTTC TGTGGTGGCC GGGGTGCGCA GGCCGGTGTA CGGCGGTGCC TCGCGCGAGG TGCTGGTGAC CGCCACGCCC GAACAGATGC TGCTGCGCGC CCGCCAGTAC CGCGACACGG TGGACCGCTA CGCCCGGCGC TACAACCTTT CCCCCCGTCT GGTGCTGGCC ATCATGCATG CCGAAAGCGG CTTCAACCCC AACGCGGTCA GCCCGGCGCA GGCCCTGGGG CTGATGCAGA TCGTGCCGGA AACCGCCGGG GGCGAAGTGC ATGCCTACCT GCACGGCACG CCCGGCCAGC CGCCCCGCGA TGCCCTGTTC GATCCCGGCA CCAACATCCG TTACGGCACG GTGTACCTGC ACCTGCTGGC CAACCGGCAT TTTTCCGACA TCACCAATCC GGCCACCCGC GAGCTGTGCG TCATCGCCGC CTACAACGGC GGCCCCAACG CCCTGTTGCG CGTGTTCGAT GCCGACCGGG ACAAGGCCGT GGCCGCCATC AACGCCATGA CCACCCAGCA GGTGTACGAC AAGCTGGTGC GCCACATGCC CGCCGACGAA TCTCGCAAGT ATGTTGACAA GGTGCTTGCC TCGCTGGAGA ATTTTTCATC CGTGCATTGA
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Protein sequence | MKRKRTAYGG LMAAAALAVG VLGLVAGFVP DAGSPFVRAP LSDRVLRARP AVERPVVEGE QWRMRAAVSR PDDAFSMVDD GVFAVTGSGV SSDITAVVTQ AVVPPASVHA SVAASLGVSG VSGVSGRTAE EFSPSRSVPS VSFAGGGVAV PTVDGHRPVD AMADASPMIL LGLDPLRVDG GRAGDPTLVA EPAFYGEALD QAGRPLRWTR GETSRLLARE CAATRRSVVA GVRRPVYGGA SREVLVTATP EQMLLRARQY RDTVDRYARR YNLSPRLVLA IMHAESGFNP NAVSPAQALG LMQIVPETAG GEVHAYLHGT PGQPPRDALF DPGTNIRYGT VYLHLLANRH FSDITNPATR ELCVIAAYNG GPNALLRVFD ADRDKAVAAI NAMTTQQVYD KLVRHMPADE SRKYVDKVLA SLENFSSVH
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