Gene DvMF_0177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0177 
Symbol 
ID7172053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp193386 
End bp194675 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content70% 
IMG OID643538671 
ProductLytic transglycosylase catalytic 
Protein accessionYP_002434605 
Protein GI218885284 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.00119021 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAGCGCA AACGCACGGC ATACGGCGGC CTGATGGCCG CGGCTGCACT GGCGGTGGGC 
GTGCTCGGCC TGGTGGCCGG GTTCGTGCCC GACGCGGGCA GCCCGTTCGT GCGTGCACCG
CTGAGCGACC GGGTGCTGCG CGCCAGGCCC GCCGTGGAAC GTCCGGTGGT GGAGGGCGAG
CAGTGGCGCA TGCGCGCCGC CGTGTCCCGT CCCGACGATG CGTTCTCCAT GGTGGATGAC
GGGGTGTTTG CCGTGACCGG CAGCGGGGTA TCTTCCGATA TCACGGCGGT CGTGACGCAG
GCGGTGGTTC CGCCAGCCTC GGTGCACGCG TCTGTGGCAG CCTCGCTGGG CGTGTCCGGT
GTGTCTGGCG TGTCTGGCCG CACGGCGGAA GAATTCTCCC CCTCCCGTTC CGTTCCCTCG
GTCAGCTTTG CCGGTGGCGG CGTGGCCGTG CCCACCGTGG ACGGGCACCG TCCCGTGGAC
GCCATGGCCG ACGCCTCGCC CATGATCCTG CTGGGGCTGG ACCCCTTGCG TGTGGACGGG
GGCCGTGCGG GCGACCCCAC CCTTGTGGCC GAACCCGCCT TCTACGGCGA GGCCCTGGAC
CAGGCCGGGC GGCCGCTGCG CTGGACGCGC GGCGAAACGT CGCGCCTGCT GGCCAGGGAG
TGTGCGGCCA CCCGGCGTTC TGTGGTGGCC GGGGTGCGCA GGCCGGTGTA CGGCGGTGCC
TCGCGCGAGG TGCTGGTGAC CGCCACGCCC GAACAGATGC TGCTGCGCGC CCGCCAGTAC
CGCGACACGG TGGACCGCTA CGCCCGGCGC TACAACCTTT CCCCCCGTCT GGTGCTGGCC
ATCATGCATG CCGAAAGCGG CTTCAACCCC AACGCGGTCA GCCCGGCGCA GGCCCTGGGG
CTGATGCAGA TCGTGCCGGA AACCGCCGGG GGCGAAGTGC ATGCCTACCT GCACGGCACG
CCCGGCCAGC CGCCCCGCGA TGCCCTGTTC GATCCCGGCA CCAACATCCG TTACGGCACG
GTGTACCTGC ACCTGCTGGC CAACCGGCAT TTTTCCGACA TCACCAATCC GGCCACCCGC
GAGCTGTGCG TCATCGCCGC CTACAACGGC GGCCCCAACG CCCTGTTGCG CGTGTTCGAT
GCCGACCGGG ACAAGGCCGT GGCCGCCATC AACGCCATGA CCACCCAGCA GGTGTACGAC
AAGCTGGTGC GCCACATGCC CGCCGACGAA TCTCGCAAGT ATGTTGACAA GGTGCTTGCC
TCGCTGGAGA ATTTTTCATC CGTGCATTGA
 
Protein sequence
MKRKRTAYGG LMAAAALAVG VLGLVAGFVP DAGSPFVRAP LSDRVLRARP AVERPVVEGE 
QWRMRAAVSR PDDAFSMVDD GVFAVTGSGV SSDITAVVTQ AVVPPASVHA SVAASLGVSG
VSGVSGRTAE EFSPSRSVPS VSFAGGGVAV PTVDGHRPVD AMADASPMIL LGLDPLRVDG
GRAGDPTLVA EPAFYGEALD QAGRPLRWTR GETSRLLARE CAATRRSVVA GVRRPVYGGA
SREVLVTATP EQMLLRARQY RDTVDRYARR YNLSPRLVLA IMHAESGFNP NAVSPAQALG
LMQIVPETAG GEVHAYLHGT PGQPPRDALF DPGTNIRYGT VYLHLLANRH FSDITNPATR
ELCVIAAYNG GPNALLRVFD ADRDKAVAAI NAMTTQQVYD KLVRHMPADE SRKYVDKVLA
SLENFSSVH