| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0126 |
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| Symbol | |
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| ID | 7172001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 137757 |
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| End bp | 139697 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643538620 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002434555 |
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| Protein GI | 218885234 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 0.410155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGC AGCTACCGCC TTCGCGTTCT CCCCAGGGAC AGCTTGTTGG TACGCCCCTT
CTGGATTCCC TCGCCAGCCC GCGCGACGTG GCCGGTCTGG CGCCCGAACA GGTGCAGCAG
CTGGCCGACG AGTTGCGCCA GCGCATCATC GCCACCGTGT CCCGCAACGG CGGGCACCTT
GCCCCCTCGC TGGGCGTGGT GGAACTGACC ATCGCCCTGC TGACCTCGTT CGATGCCGGG
CGGGACAAGG TGATCTGGGA CGTGGGGCAT CAGGCCTACG CCTGGAAGCT GCTTACCGGG
CGCGCGGCAA ATTTCCATAC GCTGCGGCGG GGCGGCGGCA TCAGCGGCTT TCCCAAGATG
GCGGAAAGCC CGTACGACCA CTTCGGCGTG GGGCATTCCT CCACGTCCAT CTCCGCCGCG
CTGGGCATGG CCATGGCGCG CGACTTGGCC GGGGGCGACA ACAATGTCGT GGCCGTCATC
GGCGACGGCT CCATGACCGC CGGTCTTGCC TTCGAAGGGC TGAACCAGGC AGGGGCCATG
GACCGCAAGC TCATTGTCGT GCTGAACGAC AACGAGATGT CCATTTCCAA GAACGTGGGG
GCGTTGTCGC TGTTCCTCAG CCGCAACCTG TCCAAGCGCT GGGTGCGCCG CATGAAGAAG
GACATGGAAA CCTTCATGCG CTCCATCCCC GGCATCGGCG AGGACATGCT GGGCTACGCC
AAGCGCAGCG AGCACAGCCT GAAGGGGTTC TTCACGCCGG GCATGCTGTT CGAGGCGTTC
GGGTTCAACT ACATCGGCCC GGTGAACGGG CACGACGTCA AGGCCCTGAC CCGCACCTTC
GACATGGCCC GCACCCTGGA CGAGCCGGTG CTGCTGCACG TGCTGACCCG CAAGGGCAAG
GGCTATGCCC CGGCGGAGAC CAACCCCACC CATTTCCACG GGGTGGGCCG CTTCGAGCCG
GAAACGGGCA AGGCCGCCAA GCTGGCCGAT GCCCCGGCGC TGCCCAGCTT CACCGACGTG
TTCGGCGAAA CCCTGTGCAT GCTGGCCGAG GAGGACAAGC GGGTCATAGC CATCACCGCC
GCCATGCCCG AGGGCACCGG CACCAGCTGC TTCTGTGCGC GCCACCCCGA GCGGTTCGTG
GACGTGGGCA TCTGCGAGCA GCACGCGGTG ACCTTTGCCG CGGGCCTTGC CACGCAGGGG
CTGCGCCCGT TTGTGGCCAT CTATTCCACC TTCCTGCAAC GCTCGTACGA CCAGGTGGTG
CACGACGTGT GCATCCAGAA CCTGCCGGTG GTCTTCTGCG TGGACCGGGC CGGGCTGGTG
GGCGAGGACG GCCCCACCCA CCACGGGGTG TTCGATATTT CCTACCTGCG GCACATCCCC
AACATGCACA TCCTGGCCCC GCGCGATGAA GCGCAACTGC GCCATGCCAT GAGCACCGCG
CTGGCCCTGG ATGCCCCGGT GGCCGTGCGC TACCCCCGCG GGGTGGGCAC GGGGGCCGCG
CTGCCTCCGC GCGGCGAGGT GCTGCCCCTT GGTCGGGGCG AGGTGCTGAA GCAGGGCGAA
GGGCTGGCCG TCATTGCCTG CGGCAGCCGG GTGCCCCCGG CGCTGGAGGC GGCGGAACGG
GTGGCCGAGG ATTCGGGCCG CCAGGTCACC GTGTTCGACG CGGTCTGGGC CAAGCCCCTT
CCCGTGGACC AACTGCTGGA ACTGGCCGCC ACCCACGACG CGCTGCTGCT GATAGAAGAA
AACGCCCTGG CGGGCGGCTT CACCTCTGCC GTGCTGGAAT GCCTGTCCGA CCACGGCGCG
CTGCGCGGGC AGACCATCCG CAGGCTGGGC GTGCCCGACC ACTTCGTGGA GCACGGCAGC
CAGAAGGAAT TGCGGGCCAG GCTGGGCCTG TGCGTGGACG GCATTGAGGA GACTCTGCGG
TCCATGCTGG GGGTGGAGTA G
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| Protein sequence | MTEQLPPSRS PQGQLVGTPL LDSLASPRDV AGLAPEQVQQ LADELRQRII ATVSRNGGHL
APSLGVVELT IALLTSFDAG RDKVIWDVGH QAYAWKLLTG RAANFHTLRR GGGISGFPKM
AESPYDHFGV GHSSTSISAA LGMAMARDLA GGDNNVVAVI GDGSMTAGLA FEGLNQAGAM
DRKLIVVLND NEMSISKNVG ALSLFLSRNL SKRWVRRMKK DMETFMRSIP GIGEDMLGYA
KRSEHSLKGF FTPGMLFEAF GFNYIGPVNG HDVKALTRTF DMARTLDEPV LLHVLTRKGK
GYAPAETNPT HFHGVGRFEP ETGKAAKLAD APALPSFTDV FGETLCMLAE EDKRVIAITA
AMPEGTGTSC FCARHPERFV DVGICEQHAV TFAAGLATQG LRPFVAIYST FLQRSYDQVV
HDVCIQNLPV VFCVDRAGLV GEDGPTHHGV FDISYLRHIP NMHILAPRDE AQLRHAMSTA
LALDAPVAVR YPRGVGTGAA LPPRGEVLPL GRGEVLKQGE GLAVIACGSR VPPALEAAER
VAEDSGRQVT VFDAVWAKPL PVDQLLELAA THDALLLIEE NALAGGFTSA VLECLSDHGA
LRGQTIRRLG VPDHFVEHGS QKELRARLGL CVDGIEETLR SMLGVE
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