Gene DvMF_0120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0120 
SymbolispG 
ID7171995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand+ 
Start bp130879 
End bp131970 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content67% 
IMG OID643538614 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002434549 
Protein GI218885228 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value0.660507 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCG AACGCAGGCG GACCCGCGAG GTCCGCATCG GCTCCGTGCG CATCGGGGGG 
GACAACCCCG TGGTGGTGCA GAGCATGGCC AACACCGACA CGCGCGACGT GGACGCCACC 
GTGGGGCAAA TCCGCGCGCT GGCCGCAGTG GGGTGCGAGG TGGTGCGCCT TGCCGTGCTG 
AACGAGGCGG CTGCGGCGGC CATCGGCCCC ATTCGCGCCG CATCGCCCGT GCCGCTGGTG 
GCGGACATCC ATTTCGACCA TCGTCTGGCC GTCGCCGCGC TGGAAGCAGG CGTGGACGCC 
CTGCGCATCA ACCCCGGCAA CATCGGGGGC GAGGCCAACG TGGCCCGCGT GGTGGACGCG 
GCCCGCGCGC GCGGCGCGTG CATCCGGGTG GGGGTCAATT CCGGATCGGT GGAAAAACAT 
CTGCTGGAAC GCTTTGGCGG ACCCACGCCC GAAGCCATGG TGGAAAGCGC CCTCGGCCAC 
GTGCGCATGC TGGAGGACCG GGGCTTCGGC GACATCAAGA TATCGCTGAA ATCCTCGTCG 
GTGCTGCACA CCATAGACGC CTACCGCGTA CTGGCCGAAC GGTGCGACTA CCCCCTGCAC 
ATCGGCGTGA CCGAGGCGGG CACCATGCTG CGCGGGTCGG TCAAGTCGTC CGTGGGCCTT 
GGCGTGCTGC TGTGGCTGGG CATTGGCGAC ACGCTGCGCG TTTCGCTGAC CAGCGACCCG 
GTGGAGGAAA TCCCCGTGGC GTGGGAAATT CTGCGTTCGC TGGGGCTGCG CCACCGGGGG 
CCGGAAATCA TCTCCTGCCC GACATGCGGG CGCACCGAAA TAGGGCTCAT CAGCCTTGCG 
CAGGAAGTGG AACGCCGCCT TGCGGGCGAG ACGGAAAACT TCAAGGTGGC CGTCATGGGT 
TGCGCCGTCA ACGGCCCCGG TGAAGCGCGC GAGGCCGACA TCGGCATTGC GGGCGGGCGC 
GACAAGGGCA TCATCTTCCG CAAGGGAGAG ATCATACGAA CAGTCAAGGG CGGCGCGAAC 
CTGCTCGCCG CCTTCATGGA AGAACTCGAT ACGTTCCTTG CCGAACGCAA GGCAGCCAGA 
AAGGACAGCT GA
 
Protein sequence
MTIERRRTRE VRIGSVRIGG DNPVVVQSMA NTDTRDVDAT VGQIRALAAV GCEVVRLAVL 
NEAAAAAIGP IRAASPVPLV ADIHFDHRLA VAALEAGVDA LRINPGNIGG EANVARVVDA 
ARARGACIRV GVNSGSVEKH LLERFGGPTP EAMVESALGH VRMLEDRGFG DIKISLKSSS 
VLHTIDAYRV LAERCDYPLH IGVTEAGTML RGSVKSSVGL GVLLWLGIGD TLRVSLTSDP 
VEEIPVAWEI LRSLGLRHRG PEIISCPTCG RTEIGLISLA QEVERRLAGE TENFKVAVMG 
CAVNGPGEAR EADIGIAGGR DKGIIFRKGE IIRTVKGGAN LLAAFMEELD TFLAERKAAR 
KDS