Gene DvMF_0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0105 
Symbol 
ID7171979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand+ 
Start bp113673 
End bp114716 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content59% 
IMG OID643538598 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_002434534 
Protein GI218885213 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value0.25738 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCATCA AACAAGGCGA CAGGCTTATC AACACCCGGA ACTGGTCGGA GCTGGTGAAG 
CCCGAACAGA TCACCCGGGA CAGCGACCCG GCCGATGCCA TGTACGGCAA GTTCGTGTGC 
GAACCGCTGG AACGTGGCTA CGGCACCACC ATCGGCAATG CGCTGCGTCG GGTTCTGCTG 
TCGTCGCTTC AGGGCGCGGC GTTCGTCTCG GTGAAGGTCT CGGGCGTACA GCACGAGTTC 
ACCACCATTC CCGGCGTGCT CGAGGACGTG ACCGACATCG TCCTCAACCT GAAGCAGGTG 
CGTCTTGCCA TGGACACGGA CGAGCCCCAG TTCCTGGAGC TTTCCGTGAA CAAGAAGGGC 
GCGGTGAAGG CCGGCGACAT CAAGACCAAC CAGCACGTGA TGGTCCTCAA CCCCGACCTG 
CACATCGCCA CGCTGACCGA AGACCTGGAA CTCACCTTCG AGTTCGAGGT GCGCATGGGC 
AAGGGCTACG TGCCCGCGGA CATGCACGAA GGCCTCAGCG AAGAGATCGG GCTGATCAAG 
CTGGACTCCA GCTTCGCCCC GGTCCGCAAG GTCGCCTACA CGGTGGAGCA GGCTCGCGTC 
GGCCAGATGA CCAACTACGA CAAGCTCATC ATCGAGGTCT GGACCGACGG TTCCGTGACC 
CCCGAAGATG CGATTGCGTA CAGTGCCAAG ATCATCAAGG ACCAGATATC CGTCTTCATC 
AACTTCGATG AACGCATTTC GGGTGAAAGT TCCGGCAATT CGTCGGGCAG CAGCGACGTC 
AACGAGAACC TGTTCAAGGG GATCGACGAA CTTGAGCTGT CCGTGCGCGC CACCAACTGC 
CTGAAGAGCG CCAACATCAC CCTGGTGGGC GAACTGGTTC AGAAGTCCGA GAACGAAATG 
CTGAAGACCA AGAACTTCGG TCGCAAGTCG CTGGATGAAA TCAAGCGGGT GCTGTGCGAC 
ATGAGCCTGG ACTTCGGCAT GAAGGTCGAC GGCTTCGAGA AGAAATACCA GGAATGGAAG 
AGGAAGCAGC AAAATGAGGC ATAG
 
Protein sequence
MLIKQGDRLI NTRNWSELVK PEQITRDSDP ADAMYGKFVC EPLERGYGTT IGNALRRVLL 
SSLQGAAFVS VKVSGVQHEF TTIPGVLEDV TDIVLNLKQV RLAMDTDEPQ FLELSVNKKG 
AVKAGDIKTN QHVMVLNPDL HIATLTEDLE LTFEFEVRMG KGYVPADMHE GLSEEIGLIK 
LDSSFAPVRK VAYTVEQARV GQMTNYDKLI IEVWTDGSVT PEDAIAYSAK IIKDQISVFI 
NFDERISGES SGNSSGSSDV NENLFKGIDE LELSVRATNC LKSANITLVG ELVQKSENEM 
LKTKNFGRKS LDEIKRVLCD MSLDFGMKVD GFEKKYQEWK RKQQNEA