Gene DvMF_0096 details

Gene Information

• Locus tag: DvMF_0096
• Symbol: rpsE
• ID: 7171970
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: +
• Start bp: 108658
• End bp: 109149
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643538589
• Product: 30S ribosomal protein S5
• Protein accession: YP_002434525
• Protein GI: 218885204
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 67
• Fosmid unclonability p-value: 0.0990487
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAACAGA ATGAGTTCGG GTTGGTAGAG AAGATCGTCT ACCTTAACCG AGTTGCCAAG 
GTTGTGAAGG GCGGTCGCCG CTTCAGCTTC AGCGCCCTCG TTGTCGTGGG CGACGCCAAG 
GGTGCCGTGG GCTTCGGCCT CGGCAAGGCC CAGGAAGTGC CGGAAGCCCT GCGCAAGGCC 
ACCGAACGCG CGAAGAAGGA CATGGTCCAG ATTCCGCTGG TGGACGGCAC CCTTCCGTAC 
GAAATCCTGG GCGAGTTCGG CGCCGGCTGC GTAATGCTGA AGCCCGCCTC CAAGGGTACC 
GGCATCATCG CCGGTGGTGC GGTGCGCGCC GTCATGGAAG CCGTGGGCGT GACCGACGTG 
CTTGCCAAGG CCATCGGCAC CAACAACCCG CACAACGTGC TGCGCGCCAC CATGGCGGGG 
CTTACCTCGC TGCGCAGCGC CGAGTACGTG AGCCAGCTTC GCGGCATGAA GCTCGAAGCG 
CCCAGAAAGT AG 

 

Protein sequence

MEQNEFGLVE KIVYLNRVAK VVKGGRRFSF SALVVVGDAK GAVGFGLGKA QEVPEALRKA 
TERAKKDMVQ IPLVDGTLPY EILGEFGAGC VMLKPASKGT GIIAGGAVRA VMEAVGVTDV 
LAKAIGTNNP HNVLRATMAG LTSLRSAEYV SQLRGMKLEA PRK