Gene AFE_3304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_3304 
SymbolthiE 
ID7134557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand- 
Start bp2977802 
End bp2978455 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content66% 
IMG OID643531647 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_002427657 
Protein GI218667114 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.324027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGGAG ATGACCATTT GATTTCCGGG CTGTATGCCA TCACCGACGC CCATCTGATG 
CCGGAGCCCG TTTTCCTGGC GCGGGCCGAG GCAGCGCTGC GCGGGGGGGC GCGCATTCTG 
CAATACCGGG ATAAGGGCGA TGTCGTGACC GACGCGCGGC GACGGCGCAT GCAGGCGGGC 
GCCTTGCGGG AACTCTGTGC GCAGTACGGC GCCCTTTTCG TCGTCAATGA TGATCCCCGG 
CTGGCGCGGG TTGTCGGCGC TCCCGCCCTG CATGTGGGGG CAGAAGATGC GCCCCCGGCG 
GCATTGCGTG CGCAATTCGG CCGCGCCATA CTCATCGGGG TTTCCTGCTA TGGATCGGTA 
CCGCAGGCGC AGGAGGCGGC GACGCAGGGG GCGGACTACG TGGCCTTCGG GTCTTTTTTC 
GCCTCTCCCA GCAAACCGCA GGCGCCGGTG GTCAGTGTGG ATGTCCTGAC GGCGGCGCGC 
GCGATGATCG ACCTGCCCAT TGTCGCCATC GGCGGCATCA CGGAGGCCAA TGGGCGTGCC 
TTGATTGCGG CTGGTGCGGA TGCCCTGGCG GTAATTTCCG GCGTTTTCGC CGCGGAGGAT 
GTGGAAGGGG CGGCACGACG CTTCACCGCC CTGTTCAATA ACCGTAAGGA GTGA
 
Protein sequence
MAGDDHLISG LYAITDAHLM PEPVFLARAE AALRGGARIL QYRDKGDVVT DARRRRMQAG 
ALRELCAQYG ALFVVNDDPR LARVVGAPAL HVGAEDAPPA ALRAQFGRAI LIGVSCYGSV 
PQAQEAATQG ADYVAFGSFF ASPSKPQAPV VSVDVLTAAR AMIDLPIVAI GGITEANGRA 
LIAAGADALA VISGVFAAED VEGAARRFTA LFNNRKE