Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_3300 |
Symbol | hemC |
ID | 7134520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 2974779 |
End bp | 2975699 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643531643 |
Product | porphobilinogen deaminase |
Protein accession | YP_002427653 |
Protein GI | 218666388 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.999911 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCACT CCCTTCGCAT TGGTACCCGT GCCAGCCCGC TGGCCGTCTG GCAGGCAGAG CACGTCCGCG CCGCCCTGTT GCGGCTTCAC CCAGGGATGG CGGTCGAGAT CATCACCATG ACCACCAGCG GCGACGTTCT TCTGGATGCA CCTCTGCATG CGCTGGGGGG TAAGGGCCTC TTCGTCAAGG AAATCGAAGA TGCCCTGCAG CAGCGGCGGG TGGATGTCGC CGTGCACTCC ATGAAGGATG TGCCGGCGCT ACAGCCGGAT GGTCTGGAAA TCGTCGCCAT CATGGCCCGG GAGGATGTCC GGGATGCTTT CGTCAGCAAT ACCTTTCTGC ATCCCGATGC CCTGCCGGAG GGCGCACGGG TGGGAAGCTC CAGCCTGCGG CGGCGGGCGC AATTACTGGA GCGCTACCCT CATTTGCGGG TCGAGGACCT GCGCGGCAAT GTCGCTACGC GCCTGCGTAG GCTGGACGAG GGGCATTATG ACGCGATCAT TCTCGCCGCT GCGGGCCTAA AACGCCTTGG TTTGCCCGAT CGCATCACCC ATCTGCTGGA TATCGACCGC TCTCTGCCGG CGGTGGGGCA AGGGGCCATA GGCATCGAGG CGCGCAGCGA CGATCGGCGG ACCCGGGAAC TGCTGGCCCC CCTGGCCGAC GCCGATACCC AGAACTGCGT GCTGGCGGAG CGCAGCATGA ATCAGGTGCT GGGCGGGGAC TGCCGGCTCC CGGTGGCGGC GCTCGCCCGA TGGCAGGGGC CGCAGATGCT CCTGCGCGGG CTGGTCGCCA CCCCGGATGG GCGCCGGGTA CTGCATGCCG AGGCGAAGGG CAGCGACCCC GTCGCCCTGG GCATGGCCGT CGCTGCGGCC TTGGTCGCGC AAGGGGCGGC AGAGATTATC GAGGACGTCC GGAACGCATG A
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Protein sequence | MPHSLRIGTR ASPLAVWQAE HVRAALLRLH PGMAVEIITM TTSGDVLLDA PLHALGGKGL FVKEIEDALQ QRRVDVAVHS MKDVPALQPD GLEIVAIMAR EDVRDAFVSN TFLHPDALPE GARVGSSSLR RRAQLLERYP HLRVEDLRGN VATRLRRLDE GHYDAIILAA AGLKRLGLPD RITHLLDIDR SLPAVGQGAI GIEARSDDRR TRELLAPLAD ADTQNCVLAE RSMNQVLGGD CRLPVAALAR WQGPQMLLRG LVATPDGRRV LHAEAKGSDP VALGMAVAAA LVAQGAAEII EDVRNA
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