| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_3288 |
|---|
| Symbol | hypB-2 |
|---|
| ID | 7135790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 2963517 |
|---|
| End bp | 2964317 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643531631 |
|---|
| Product | hydrogenase accessory protein HypB |
|---|
| Protein accession | YP_002427641 |
|---|
| Protein GI | 218665305 |
|---|
| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
|---|
| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTACCA CATGTGGTTG CGGCGGTAGC GAGGTGAAGA TCGAGGGGCA CGATCATGAC
GAGGGTAACA GGCGGCATAG GCATGGAGAC GAATCCCAGC CGGCCCACGT TCATGCCCCT
GGCATGGACG GACGGCGCAT GGTGCGGATC GAGCAGGACA TTCTGGCCAA GAATCAGCGC
CACGCTGACG CCAACCGCCG CCATCTGGCC GAGCGGGGTA TCTTTGCGCT GAACCTGGTC
TCCAGCCCCG GATCGGGCAA GACCACGCTG CTGGTGCGCA CCGTCGAGGC CCTGCAGCAC
CGGCTGCCGG TGGCGGTGAT CGAAGGGGAT CAGCAGACAG CGCGGGATGC CGAGCGCATC
CGTGCCACCG GAGTGACCGC ATTGCAGATC AACACCGGCA AGGGTTGCCA CCTGGACGCC
CACATGGTGG GACATGCACT GGAACAGTTA CAGCCCGCCG TCGGCGGGGC GCTTTTCATC
GAAAACGTCG GGAACCTGGT CTGCCCGGCG GCGTTTGATC TGGGGGAAGG CCACAAGGTG
GTGGTGCTGT CGGTAACCGA AGGGGAGGAC AAGCCCCTCA AATATCCGGA TATGTTCCAT
GCCGCCGACC TCATGCTCCT CAACAAGGTC GACCTGCTCC CCTATCTGGA ATTCGATGTG
GACGTCTGCA TCGACTATGC CCGACGGATC AACCCCAAAC TCTCGGTCCT GCAGGTTTCC
GCCATCCGCG GCGACGGCAT GACCGCATGG CTGGACTGGA TCGAAAGGGG CGCCGGGCTG
GCATCGGCCG CCATACGGTA A
|
|---|
| Protein sequence | MCTTCGCGGS EVKIEGHDHD EGNRRHRHGD ESQPAHVHAP GMDGRRMVRI EQDILAKNQR
HADANRRHLA ERGIFALNLV SSPGSGKTTL LVRTVEALQH RLPVAVIEGD QQTARDAERI
RATGVTALQI NTGKGCHLDA HMVGHALEQL QPAVGGALFI ENVGNLVCPA AFDLGEGHKV
VVLSVTEGED KPLKYPDMFH AADLMLLNKV DLLPYLEFDV DVCIDYARRI NPKLSVLQVS
AIRGDGMTAW LDWIERGAGL ASAAIR
|
|---|
| |