Gene AFE_3247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_3247 
Symbolrpe 
ID7134912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand- 
Start bp2923120 
End bp2923782 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content60% 
IMG OID643531590 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_002427600 
Protein GI218667831 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCAGT TCAAGATTTC CCCCTCCATC CTTTCGGCGG ATTTTGCCCG TCTGGGTGAG 
GAAGTGCGCG CCGTCGATGA GGCGGGTGCC GACTATATCC ATATCGACGT CATGGACAAC 
CATTTCGTCC CCAATCTGAC CATCGGACCG CTGGTGGCGG CCGCCATCAA GCCCCACACC 
CAAAAGCCGC TGGATGTCCA CCTCATGATC TCACCGGTGG ACAGCATCAT TCCCGATTTC 
GCCAAGGCCG GCGCCGATAT CATTACCGTG CATCCCGAAG CGACGATCCA TCTGGACCGT 
ACTATTCAGT TGATCCACAG CCTGGGCTGT AAGGCTGGCG TTTCCCTCAA TCCTTCCACG 
CCCCTCGATG TGCTGGACTA TGTCCTGGAG AGTCTTGACC TGGTGCTGGT GATGAGCGTC 
AACCCCGGTT TCGGCGGGCA GAGCTTTATC GAGTACACCC TGCGCAAGAT CGAGGCGATC 
CGCAAGCGCA TCGAGGCGAC CGGCAAGGCT ATCGAACTGG AAGTGGATGG TGGCGTCAAG 
GTGGACAATG TGCGGCGGGT CGCCGATGCC GGCGCCGATG TCTTCGTGGC GGGCAGCGCC 
ATCTATAACA CCCCCGACTA CGCCGCGACC ATTGCCGCTT TCCGCAAAGC CCTGGCGGGC 
TGA
 
Protein sequence
MTQFKISPSI LSADFARLGE EVRAVDEAGA DYIHIDVMDN HFVPNLTIGP LVAAAIKPHT 
QKPLDVHLMI SPVDSIIPDF AKAGADIITV HPEATIHLDR TIQLIHSLGC KAGVSLNPST 
PLDVLDYVLE SLDLVLVMSV NPGFGGQSFI EYTLRKIEAI RKRIEATGKA IELEVDGGVK 
VDNVRRVADA GADVFVAGSA IYNTPDYAAT IAAFRKALAG