| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_3235 |
|---|
| Symbol | |
|---|
| ID | 7135380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2914011 |
|---|
| End bp | 2914787 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643531578 |
|---|
| Product | ABC-2 type transporter, permease protein, NodJ family |
|---|
| Protein accession | YP_002427588 |
|---|
| Protein GI | 218665659 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR01291] ABC-2 type transporter, NodJ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATAC GTGACGCCTT GCCGGGGGCC GGGGCGCTGG CCGTACTGCA GCGCAACTTC
GGTGTCTGGC GCAAGTTGCT GGTGCCGAGC CTGCTCGGCA ACTTCGGTGA CCCGCTCCTT
TATCTGCTGG CGCTGGGTTA CGGCCTGGGG CACTTCGTCG GGCAGATGGA CGGAATGCCC
TATATCACCT TCATCGCCTC GGGCATCGTC GCCAGCAGCG TGATGAACAC CGCCAGCTTC
GAGGGTCTGT ACTCGGCCTT TACCCGGATG AGCGCCCAGC ACACCTACGC AGCGATGCTG
GCTACCCCCT TGCGGGTCAG CGACATCCTC GCCGGTGAGG TGGCCTGGTG CGCCGTCAAA
GGGCTGATCA GTGCCGTGGC CATCATCATC GTCGCCAGTC TTTTTGACGC CATACAGGGC
CCCTGGGTGA TCCTGACGCT GCCGGTCATT TTGCTCGCGG GGCTGAGCTT CGGCGGGGTG
GCGCTGGTCA TCACGGCACT GGCACGCAGT TATGATTTTT TCATGTATTA TTTCACTCTG
GCGGTGACGC CGATGTTTCT CTTCTGCGGC GTTTTCTACC CCCTCCAATC GCTGCCGCCC
TTCGCTCAGG ACATCGCAGA GGTGCTGCCG CTGACCCATG CGGTGGCCCT GCTGCGGCCG
CTGCTGACCG GGCATCTGCC CCATGAGGTG CTGTACCACA CGGGCGTGCT GCTGCTGTAC
ACCCTGGTGG CCTATGTGCT TGGGTGGCGT CTGCTCAGTC GCCGGTTGCT GCGCTGA
|
|---|
| Protein sequence | MPIRDALPGA GALAVLQRNF GVWRKLLVPS LLGNFGDPLL YLLALGYGLG HFVGQMDGMP
YITFIASGIV ASSVMNTASF EGLYSAFTRM SAQHTYAAML ATPLRVSDIL AGEVAWCAVK
GLISAVAIII VASLFDAIQG PWVILTLPVI LLAGLSFGGV ALVITALARS YDFFMYYFTL
AVTPMFLFCG VFYPLQSLPP FAQDIAEVLP LTHAVALLRP LLTGHLPHEV LYHTGVLLLY
TLVAYVLGWR LLSRRLLR
|
|---|
| |