| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_3068 |
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| Symbol | pdhC |
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| ID | 7136320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 2755513 |
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| End bp | 2758464 |
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| Gene Length | 2952 bp |
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| Protein Length | 983 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643531419 |
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| Product | pyruvate dehydrogenase complex, E2 and E3 components |
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| Protein accession | YP_002427435 |
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| Protein GI | 218666216 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAC CTTACGTCAT CAAAATGCCG CAACTTTCCG ACACCATGAC GGAAGGTGTC
CTTGTATCCT GGGAGAAGCC TGCGGGCGCG CGGGTAGAGC GTGGCGACGT GGTGGCGACG
GTGGAAACGG ACAAGGCCAT CATGGATGTC GAGGTGTTTC GTTCCGGTTA CCTGGCGGGG
CCCCTGGCCG AGGCCAACAG TGTCATTCCG GTGGGCGGGA CTATCGGCTA TATCACCGAT
AGCGCGGTGG AAACGGTGGC AGCGCCTGTT CCTGCAGCGC CTGCGGTCGT GCCGACGGGG
CCGGCATCCG CTACGCCACC CGCCCCTGAG GGCTATGCGG TGAAGATGCC GCAGCTCTCC
GACACCATGA CCGAAGGTGT GCTGGTATCC TGGGAAAAGG CACCGGGGGA CAGGATACAG
CGCGGGGATG TGGTGGCGAC GGTGGAAACG GACAAGGCCA TCATGGACGT GGAAGTGTTC
CGTGAGGGAT ACCTGTCGGG TCCTTTGGTG GCCGTGGATG CGGTGGTGCC CGTAGGAGAG
GCCATCGCCT GGCTAGTGGA GTCACCGGAG CAGGTAAGCC ACGAAAACGC TGTCCATGAC
GGAGGGCTGC GCCAGCCCGA TGCGACATCG GCGCCGGTAG CGACTCCCTT GCCTGCTGCC
GCCATGTCTG GCCCAGTACC GGGCGCAGAT CCGGCGCCGC GTCCGCAGCA AGGGGCCGCC
AGCCCCTTTG CCCGGCAGTT GGCGGGCCAG CGAGGTGTGG ATATCAACGG GCTGCGCGGT
ACGGGGCCAG CGGGCGTGAT CGTCGCCGCA GATGTTCTCG GCGCTGCTGG TGGCCGTGCA
GCCCCGGTCG CGTCGAGCGG TACTGCCGAG CCCGCGGTGC CCGGTAACGG CCGCGCCATG
ACGGCCATCG AAAGAGCGAT CAGCCAGGCG ATGGCCGCTT CCCTGAGTAT TCCGGTTTTT
CATGTCACCG TGCAGGTCAG GCCCGAGGCG CTGATCCGCG CCGCCAAGGC ACACAAGCTT
TCCGTCACGG TGGCGATCGC CAAGGCCGCT TCGCAGGCGT TGCACCGACA CCCTCTGGTG
AATGCCGCTT ATCAGCCTGT GGATAAGATT GTCGAACGCA GTCAGCATGA CATCGGCATT
GCCGCGACTA CGGAAGACGG TGGTCTGATT GTGCCTGTCC TGCGCGGTGT CGAAGGCAAG
ACGCCGGAGC AGTTGCAGAC GGAGTGGACC TCATTGCTGG AGAAGGCGCG CAAACGTCGT
CTCAGTCCAC CTGAATATAC CAACCCTACC TTTACCATCT CGAACATGGG GATGTACGGC
ATTGCCCAGT TCGATGCCAT CGTCACCCCG GGGACGGCGG CCATCATTGC GATCGCCGGG
AATGGACCCG AAGGCATGCC CATCACCATC ACGGCAGACC ACCGGGTGGT CAATGGCGCC
GAGGCGGCGC TGTTCCTCAA TGACCTGAAA CAGGCCATTG AGCATCCCGA GAACTGGCTG
GGTAGCGGCG GCCCGGTGAT TCCCGAAGGG GATTACGACG TGCAAGTGCT GGTCATCGGC
GCAGGCCCCG GCGGCGAAGA CTGCGCCCGC GAGCTCGCAG AGAACGGTAT CAGGGTGGCC
ATGGTCAACG ATGCGCCCCT GCCGGGCGGC GAATGTCTGT GGCGGGGCTG CATTCCCTCC
AAGGCTTGGC GCGCTGCTGC GGATCGCATC CGCGACCGCG AGCACGACGC GGCGATGGGC
ATTACCCTGG GCACTCCCAG GCTGGATTGG GCACAACTGG AACAGCATCG GCGCGGTATT
CTCCAGACCC GCGGAGAAAT GGCCCTGAAA ACCGATCAGG GTGTGAAAAT TCAGGTGCTG
GAAGGCTATG CCCGTTTCAC CGGTGACCAC AGCGTCGAGA TCAGCGGCAA GGATGCGCGG
ACCCTGACCT TCGGAGCCTG TGTCATTGCT ACGGGCGCAC CCGCCTTTGT GCCGCCGATT
CCCGGCATTC AGGACGCGTT GAAGAGTGGT GCGGCGGTGA CTTCCGATAC GGTCTGGAAC
CTGAAACAGC CGCCCGCGCG CCTCTGCGTC ATCGGCGCCG GCGCCATCGG TATGGAAATG
GCGCAGATGT TCCACGACTT CGGCGCCGAA GTGCGGGTAC TGGAAGCCCT GCCACGGCCG
GTGGCCGAGA TGGAAAAGGA AGTCGCCGAA CAGTTGATGA AGGCCATCGC CCATAACAGC
CTGCGTTTGC AGGTGCTGAC CGGAGTCAAG GTGACGGAGG TCGCGGGGCA ACCCGGCCAG
TTGGAGGTGC GTTACCAGTC AGGCGACGAG GCGGCGAATT ATGCCTGTGA TCTGCTGCTG
GTGGCGACGG GTAAGCGCCC GGATACCAGT GGGCTGAATC TGGCCGCGGC CGGTGTGGCT
TTGGGAGATC GCGCCGTCAT CGCCGTCGAT GCCTCCGGGC GCACCAATGT GCCCCATATC
TATGCGGTCG GTGATGTCAT CGGCGGCTAC ATGCTGGCCC ACACCGCCGG TCAGCAGGGA
CGGGTGGCGG CCGCCAGTTT GCTTGGCCAC AGCGCTCGTT ATGAAGCGGC TAAAGACTGC
GGGGTGACCT TCACCCGGCC CCAGTGCGCG TTTGTCGGCC TTTCCCTGGA GCAGGCCAGG
GCGGAAGGGA TCGACGCGGT CGAGGTCAAG GTGCCCCTGA GCATCGATGC CAAGGCCATG
ATGACCGGCG AGACCGACGG ACTGATCAAG ATCGTCGCCG ACAAGATCAG CCACCGTATC
GTCGGTGTGC ATTTCCTCGC CGATCATGCC GATACCCTGG TGGGCGAGGC CGTGATGATG
GTCAGCGCCG GTTTGACCCT GGAGCAGGTG GCTGGCGCCA TTCATCCCCA TCCGACTCAG
ACCGAACTCT TCGGCGAAAT GGCGCGACGC CTGTTATCCC GCCTGCGGCG CAGTGCCCGG
GCGGCGAGCT GA
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| Protein sequence | MAEPYVIKMP QLSDTMTEGV LVSWEKPAGA RVERGDVVAT VETDKAIMDV EVFRSGYLAG
PLAEANSVIP VGGTIGYITD SAVETVAAPV PAAPAVVPTG PASATPPAPE GYAVKMPQLS
DTMTEGVLVS WEKAPGDRIQ RGDVVATVET DKAIMDVEVF REGYLSGPLV AVDAVVPVGE
AIAWLVESPE QVSHENAVHD GGLRQPDATS APVATPLPAA AMSGPVPGAD PAPRPQQGAA
SPFARQLAGQ RGVDINGLRG TGPAGVIVAA DVLGAAGGRA APVASSGTAE PAVPGNGRAM
TAIERAISQA MAASLSIPVF HVTVQVRPEA LIRAAKAHKL SVTVAIAKAA SQALHRHPLV
NAAYQPVDKI VERSQHDIGI AATTEDGGLI VPVLRGVEGK TPEQLQTEWT SLLEKARKRR
LSPPEYTNPT FTISNMGMYG IAQFDAIVTP GTAAIIAIAG NGPEGMPITI TADHRVVNGA
EAALFLNDLK QAIEHPENWL GSGGPVIPEG DYDVQVLVIG AGPGGEDCAR ELAENGIRVA
MVNDAPLPGG ECLWRGCIPS KAWRAAADRI RDREHDAAMG ITLGTPRLDW AQLEQHRRGI
LQTRGEMALK TDQGVKIQVL EGYARFTGDH SVEISGKDAR TLTFGACVIA TGAPAFVPPI
PGIQDALKSG AAVTSDTVWN LKQPPARLCV IGAGAIGMEM AQMFHDFGAE VRVLEALPRP
VAEMEKEVAE QLMKAIAHNS LRLQVLTGVK VTEVAGQPGQ LEVRYQSGDE AANYACDLLL
VATGKRPDTS GLNLAAAGVA LGDRAVIAVD ASGRTNVPHI YAVGDVIGGY MLAHTAGQQG
RVAAASLLGH SARYEAAKDC GVTFTRPQCA FVGLSLEQAR AEGIDAVEVK VPLSIDAKAM
MTGETDGLIK IVADKISHRI VGVHFLADHA DTLVGEAVMM VSAGLTLEQV AGAIHPHPTQ
TELFGEMARR LLSRLRRSAR AAS
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