| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2975 |
|---|
| Symbol | |
|---|
| ID | 7135651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 2665813 |
|---|
| End bp | 2666985 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643531326 |
|---|
| Product | capsule polysaccharide export protein, BexD/CtrA/VexA family |
|---|
| Protein accession | YP_002427342 |
|---|
| Protein GI | 218665440 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTCAA AGAGTGTGCT CCAATTGGCG ATGGCCTTCG CCATGATGGG GCTCTGCGGC
TGCGCCTCTT ACCTCCCTTA TTCGGGTCCT CGCACCTCGT CGGTCGTGGA TGCCGGGGAG
AACAAGGCCT TGGCTGGCAT CCAGGTGGTG GATGTCAATT ATGCCCTGGC GCGTCTCATT
AAGGATAAGC TGGAGAAACC CGCCTTTTCG TCCCTGGCGG ACTTGGCCAA CGCGAACCCC
AATCTGTATA CTGTGGGACC AGGGGATACC CTGCAGGTGT ACATCTGGGA GGCGCCTCCG
GCCATGCTCT TTACCTCCGT CCCTAGTTCC ATGGCTACGC CATCGGGTTC GATGATGACC
GCGATCCCTG AGCAAATAGT GAGCAGTGAC GGTGATATCG CCATTCCTTT TGCGGGTGAG
ATTTCCTGTT CCGGTCGGAC ACTGACTCAG ATCGAGGCGG AAATCCGGCA AAAACTGCGG
GGTCAAGCCA ACGACCCGCA GGTGGTGGTG AGTTTGGTCA ACAATTATTC ACGGAGTGTT
ACCGTCGTGG GCAACGTGAC GCGTAGCACG TCGGTACCCC TGGTGCCGGG CGGTGTGAAT
GTGCTCCAGG CCCTGGCGGC GGCGGGCGGG GTGGACAAGC CGGTAAACAA AGTCACCATG
CAGATTTCCC GCGCCGGAAA GGTGGTGGAT ATGCCTCTGG AAAGCGTCAT CAAAAATCCC
CAGGAAAATA TCTCATTACA TGCGGGGGAC ATACTCACGG CCCTGTATGA ACCCCTGCAT
GTCACCATCC TGGGAGCTAC GACGCAGAGC CGGGAGCTGG ACTTTGAAGC GACGGGCGTC
AGCCTGTCCC AGGCCTTGGC CCGCGCGGGC GGTCTGAATG GTCATGAGGC GGACGCGAAA
GGGGTCTTCG TCTTCCGCTT TGAAAAACCC TCCCTGCTGC CCCAATGGCC GCATCCCGTG
CAGGTGGCGC AGAACGGCCT GGTCCCGGTG GTGTTCCGCT TTGATCTCAG TAATCCGGCT
ACGTTGTTCG CGGCGCAGAC CTTCCCCATC CAGAATCATG ACCTGATTTA TGTGGGTACC
GCCCCGATCA CGGAACTTCA GAAGTTTCTG GGCATGGTTG TGCAGATCGT CTACCCCATT
CAGGGTCTGA CCAATGCAGG GGTGCTCCCT TGA
|
|---|
| Protein sequence | MRSKSVLQLA MAFAMMGLCG CASYLPYSGP RTSSVVDAGE NKALAGIQVV DVNYALARLI
KDKLEKPAFS SLADLANANP NLYTVGPGDT LQVYIWEAPP AMLFTSVPSS MATPSGSMMT
AIPEQIVSSD GDIAIPFAGE ISCSGRTLTQ IEAEIRQKLR GQANDPQVVV SLVNNYSRSV
TVVGNVTRST SVPLVPGGVN VLQALAAAGG VDKPVNKVTM QISRAGKVVD MPLESVIKNP
QENISLHAGD ILTALYEPLH VTILGATTQS RELDFEATGV SLSQALARAG GLNGHEADAK
GVFVFRFEKP SLLPQWPHPV QVAQNGLVPV VFRFDLSNPA TLFAAQTFPI QNHDLIYVGT
APITELQKFL GMVVQIVYPI QGLTNAGVLP
|
|---|
| |