Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2963 |
Symbol | ctrD |
ID | 7135915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 2648246 |
End bp | 2648899 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 643531314 |
Product | capsule polysaccharide exporter, ATP-binding protein |
Protein accession | YP_002427330 |
Protein GI | 218666896 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.382388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGAGC TTTGTGAAGT GACCAAGACC TACCCTATCT ATCATGGCCA TGCGCAACGG ACCATTTTGG ATAGGATAAA TTTGCGTGTA GGGAAGGGCC AAAAATGGGG CATCCTCGGG CGGAACGGGG CGGGTAAATC GACGCTTATC CGACTCATCA GTGGTGCAGA AAGGCCTAAT ACCGGCAATA TCGTCAGAAA CATGACCGTA TCCTGGCCCT TGGCTTTTGG TGGAGCTTTT CAGGGCAGCC TCACGGGGCG GGACAATACC CGCCTCATTT GCCGAGCTTA CGGGGTGGAT TTTGATAAAA CCATAACTAT GGTGGAAAAC TTCGCAGAGC TTGGTAGTTA TCTGTGGGAA CCGGTTAAAT CTTATTCATC TGGCATGTCG GCACGACTAG CCTTTGCTAT CTCCATATCT GTGGAGTTTG ATTGTTTTCT CATCGATGAG GCGCTGGCCG TTGGTGATCA CCGGTTCCTC CAGAAATGTA ATGTAGAATT ATTTGAAAAT CGTGGCGATC GCGCCATGAT CATCGTCTCC CATCAGACAA ATATTATCCG GACCCACTGT GATCATGCCG CCGTATTGGA AAATGGCCAT CTGACGGTAC ATGAAAGCGT GGATTCTGCC ATTGCTGCGT ACGAGGCGCT CTGA
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Protein sequence | MIELCEVTKT YPIYHGHAQR TILDRINLRV GKGQKWGILG RNGAGKSTLI RLISGAERPN TGNIVRNMTV SWPLAFGGAF QGSLTGRDNT RLICRAYGVD FDKTITMVEN FAELGSYLWE PVKSYSSGMS ARLAFAISIS VEFDCFLIDE ALAVGDHRFL QKCNVELFEN RGDRAMIIVS HQTNIIRTHC DHAAVLENGH LTVHESVDSA IAAYEAL
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