Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2962 |
Symbol | ctrC |
ID | 7135131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 2647404 |
End bp | 2648249 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643531313 |
Product | capsule polysaccharide exporter, inner-membrane protein CtrC |
Protein accession | YP_002427329 |
Protein GI | 218665543 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.619605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCCACGC TAAACAAAAC GACAAAACCC GGCGAACAGG CCGGGCCTCG TTGGCACCAG AAGGAACCCA CGTTCTGGGA AGGCATTGCC ATCCAACGAA GGGTGATCTG GGCGCTTATT CTACGCGAGA CGGTTACCCG TTATGGACGA GAGAATCTGG GGATGTTGTG GTTTTTCGCC GAACCACTGC TGTTTATCGT TGGTATCACA CTTTTATGGA GCTACATCGA ACCCAGGTCC GTTCCAGCCG GAACGGTGGC CGCTTTTGCG GTGGTCAGTT ATCCGACCGT TTTGCTCTGG CGTAACACCG CGAATAGGGT GACAAAGGCT ATTGAAGTGA ATCAAGCACT TTTGCATCAC CGCCCCATTC GGGCACAGGA TTTTTTCTAC TCCAGGATAT TGCTGGAGTT CGCGAGCGCA ACAGGTTCCT TCTTGGTGAT ATTCATACTT TTTGTAGCGG TGGGCATATC CCATTTCCCT GCCAATCTCT TCGACATGGT CATGGGCTGG CTCATGGTGG CCTGGTTCGC CTTCGGCTTC GTCTTGACGA TGGGCGGACT GTCGGAAGTC AGCGAGGTGG TGGAAAAAGT GTCCCACATT ATCTTGTATC TCATGCTGCC GTTTTCTGGC GGCTTTTTCC CCGCTTATAT TGTTCCCGAA CCCATGCGGA ATTATCTTTT GCTTTTTCCT CTGGCGGATT GTGTGGAGTT TTTCCGATAT GGGTACTACG GAGACTCATT CCCCTGTTAT TACCACCTGG GGTACACCAT TATCTGCAAC CTGGCATTGA CGCTCTTCGG TTTAGCCATG ATGACCTATG CCATTCGTAA AGTAGAAGCG ACATGA
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Protein sequence | MPTLNKTTKP GEQAGPRWHQ KEPTFWEGIA IQRRVIWALI LRETVTRYGR ENLGMLWFFA EPLLFIVGIT LLWSYIEPRS VPAGTVAAFA VVSYPTVLLW RNTANRVTKA IEVNQALLHH RPIRAQDFFY SRILLEFASA TGSFLVIFIL FVAVGISHFP ANLFDMVMGW LMVAWFAFGF VLTMGGLSEV SEVVEKVSHI ILYLMLPFSG GFFPAYIVPE PMRNYLLLFP LADCVEFFRY GYYGDSFPCY YHLGYTIICN LALTLFGLAM MTYAIRKVEA T
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