Gene AFE_2933 details

Gene Information

• Locus tag: AFE_2933
• Symbol: recD
• ID: 7134529
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 2617837
• End bp: 2619777
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643531285
• Product: exodeoxyribonuclease V, alpha subunit
• Protein accession: YP_002427301
• Protein GI: 218665442
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.238613
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAGCC TCATGATCGA CCAACTCCGC GCCTGGACCA GCGCCGGCTG GCTACGGCCC 
CTCGACCTTG CCTTCGCGCA GTTCCTCATC CGCCTGGACC CGCAGGCCCC GGCCCTCCTG 
CCCCTGGCGG GCGCTCTCCT CGCCCGGCTG GAGGGAGAAG GCCACACCTG CATCGCGCTG 
GAAGACTTCC TCGGCGCACC CGAACGCTTC CTGGACTGGC CTGCGCCGGG GCACGCCATG 
CTGGCAACCG CACTCGGTGA CTGGCCCCAT GCCGCCCAAT GGACAGAAAC CCTCGCCCGG 
AGCCGCTGCG TACAGGTCAC CGAGCGCAAC GCCCCCGTCC CGGCAAACGG CGCAGAAACG 
CCCCTGGTCC TCAGTGCCGC CCGCCTCTAT TTGCGCCGCT ACTGGCGTGA CCAGCAATTC 
ATCGCCGAGG CCCTGCGCCA GCGCGCCCAA CAGCGCGTCG CCGATGCCGC CAACCCCGAG 
GCATTAAGAC CCTGGCTGGA GCAACTTTTC CCGGCGTCTG ACGAACCCGG CGACGCACTC 
CCCTGGCAAA AAATCGCCTG CGCCCTCGCC CTGCGCAGCC ACTTCAGCAT CATCACCGGC 
GGCCCCGGTA CCGGCAAAAC CTACACCGCA GCTCGCTTCA TGGCCTTGCT CATGGCGACC 
AGCAGCACAC CCCTGCGCAT CGTGCTTGCC GCCCCCACCG GCAAGGCCGC CGTGCGCATC 
GACGAATCCC TGCAGAGCGC GGTCGGCACT CTTCCGCAAT TGAGCCAAAT ACCCGATATG 
ACTGCCGCCT TCGCCCGCCT GCGTCCGGCG CGCACCCTGC ACAGCCTGCT CGGCGCCCGC 
CCCGACAGTC GTCGCTTTCG CCACGATGCT GCCAACCCCC TCGAACTGGA CGTACTCGTG 
GTGGACGAAG CCTCCATGAT TCATCAGGAG ATGATGGCCG CCCTGCTCCG CGCCCTGCCG 
CCTGCGGCCC GCCTCATCCT CCTCGGCGAT CAGGACCAGC TTGCCTCCGT CGAAGCGGGC 
GCGGTGCTGG CCGAACTCAG TCTCGGCAGC GGTAAATATG ATGCCGAGAC CTGCCACTAT 
ATGCAGGCCA GTTGCGGTGC CGCGCCGCGG CCCGGCGACA ACGGCCCCAG CCCCCTTGCC 
GCAAACATCA TCCGCCTGCA ACGCAGCCAT CGCTTCAATG CAGAAATCGG CGCGCTGGCG 
GATGCCGTGC ATGGCGGCCA CCCCGAAACC GCCGTCCGCA TCCTGCAAAC GGCGCACACT 
GGCACTCTCG CCTGGCAACC CGCCCCTGCC ATCCACCGGA TACTGGAACT GGCCCGCCCG 
GAAAGCGCCT ATGGTCGGGT CTGGCAAGCC GCGGGCCAGC CGCCACCCAA AGACCGGCAA 
CAACATAGCG CATGGGTTAA AACCATCCTC AACGACTACG CTGGCTTCCG CATCCTCTGT 
GCCCTGCGCC AAGGCCCCTG GGGCGTTACC GGCATCAACC GCGCCATCGA AGACTACCTG 
CAGCGCCAGG GCATCCTGCA GAGCCGCGGC CTTTGGTATG CCGGCCGCCC CACCCTCGTC 
ACCCGCAATG ACCCCAACCT CGGTCTCAGC AATGGCGACA TCGGCATCGC CCTGCCCGAC 
CCGGATAAAC GCCTGCGCGT CTACTTCCCC AATAGCGAAG AGGCCCCCCG CGCCATCCTC 
CCCAGCCGCC TCAACCACAC CGAAAGCGCC TGGGCCATGA CCGTCCACAA GGCACAGGGT 
TCCGAGTTCG CCCACACCGT CCTCATCCTT CCTCCGGAAG ACAGCCCCGT CCTCAGCCGC 
GAACTGCTCT ACACGGCCAT CACCCGCGCC CGCAAATGCT TCACCCTCAT CGCCCCCCGG 
GAGCGACTGG AAAACGCCAT TCAGCGCCAG ACGCGGAGGA TGAGCGGATT ACACGCGGCG 
TTATATGATC CCAGGCGCTG A 

 

Protein sequence

MTSLMIDQLR AWTSAGWLRP LDLAFAQFLI RLDPQAPALL PLAGALLARL EGEGHTCIAL 
EDFLGAPERF LDWPAPGHAM LATALGDWPH AAQWTETLAR SRCVQVTERN APVPANGAET 
PLVLSAARLY LRRYWRDQQF IAEALRQRAQ QRVADAANPE ALRPWLEQLF PASDEPGDAL 
PWQKIACALA LRSHFSIITG GPGTGKTYTA ARFMALLMAT SSTPLRIVLA APTGKAAVRI 
DESLQSAVGT LPQLSQIPDM TAAFARLRPA RTLHSLLGAR PDSRRFRHDA ANPLELDVLV 
VDEASMIHQE MMAALLRALP PAARLILLGD QDQLASVEAG AVLAELSLGS GKYDAETCHY 
MQASCGAAPR PGDNGPSPLA ANIIRLQRSH RFNAEIGALA DAVHGGHPET AVRILQTAHT 
GTLAWQPAPA IHRILELARP ESAYGRVWQA AGQPPPKDRQ QHSAWVKTIL NDYAGFRILC 
ALRQGPWGVT GINRAIEDYL QRQGILQSRG LWYAGRPTLV TRNDPNLGLS NGDIGIALPD 
PDKRLRVYFP NSEEAPRAIL PSRLNHTESA WAMTVHKAQG SEFAHTVLIL PPEDSPVLSR 
ELLYTAITRA RKCFTLIAPR ERLENAIQRQ TRRMSGLHAA LYDPRR