| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2862 |
|---|
| Symbol | |
|---|
| ID | 7134379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 2546081 |
|---|
| End bp | 2547859 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643531215 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_002427232 |
|---|
| Protein GI | 218667686 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG CGGATACCCC ACTGCGTTTT ACCGAGGTCA GCAAGAGCTT CGCCCGCGGC
CCGGCCCGGG TGCAGGCACT GGACCGACTG GAAATTGCGC TGCAGGCAGG CACCGTCACC
GGTCTGCTGG GTCCCGATGG GGCCGGCAAA ACGACGTTGA TGCGTCTGGC GGCGGGTCTG
CTCCGGCCGG ATACCGGAAT AGTGACGATC CTGGGCGCAG ACACCCGCAG CCAGGCCAAT
ACCATTCAGC GCGAAATCGG CTACATGCCC CAGCGCTTCG GCCTTTATGA AGACCTCACG
GTACAAGAGA ATCTGGATCT CTATGCCGAC CTGCAGGGAC TCGGCCGGGA GGATGCCCGC
ACCCGCCAGC AGGACCTGCT CAAGCTGACG GCCCTGGGTC CCTTTGGTGC GCGGCGTTCC
GGTGCCCTTT CGGGTGGCAT GAAGCAGAAG CTCGGCCTCG CCTGTGCGCT GTTACGCGCT
CCGCAATTGC TGCTGCTCGA CGAACCTACC GTTGGTGTCG ACCCCATCGC GCGCCGCGAG
CTCTGGGATA TTGTTCAGGG ATTGCGGGAC AAGGGCGTGA CGGTCCTCAT GAGTACGGCC
TATTTTGATG AGGCGGAGCG CTGCGACGAG ATCATCCTGC TCCATCAGGG CAAACTGCTC
AAGAAAGACA CCCCCAAGGC CTTCAGCGCG CCCCTGCGGG GACGCTGCTT TCTGGTGACC
AACAATGCTA CCAGCAAGCG GCATCTACGC GAGGCGTTAC AAGCCCGTCC GGGTGTTCAG
GATGCCCGCA TTCTGGCGGA GGGCGTGCGG GTGCTCTGCC GGACCACTGC GCAGCCCGCT
GCTACCGAGG GCGAACAATG GCAACCCGTC GATCCGGCCT TTGAAGATGC GTTTGTGGAT
TTGCTGGGCG CGCCGGTGGC CGCAGCAGCT ACCGCGGCGA CCACCACACC TGCAACTGCG
ACATCCACCC CACCCCAGGC ATCGGCCAGC GCACAACCGG GCCAGGAATC CGCGGCGAAA
ACCGTCATCG AAGTACGCGA TCTCTGCAAA TTCTTCGGTC ACTTCGAGGC CGTCAAAGGC
AACACCTTCA GTGTACGGAA AGGGCAGATT TTTGGCCTGC TGGGCGCCAA TGGCGCCGGC
AAGACCACGA CGTTCCGCAT GCTCTGTGGC CTGTTACCTG CGTCCTCCGG CACCTTGCGC
GTCGCCGGGG TCGACATGCG CCACGCCAGC GGCCGGGCGC GGGCACGCAT TGGTTACGTA
TCTCAGAAAT TTTCGCTCTA CGGCAACCTC AGTTGCGATC AGAATCTCGC CTTTTTCTCG
GCGGCTTACG GCTTACGCGG CACCCGGCGG CAGGATCGTC TGAACTGGGC GCGTCAGGAA
TTTCAGTTGC GCGACTACCG CGACGTAAAC GCCGATGATC TACCTTTGGG TATCAAGCAG
CGTCTCGCCC TGGCCTGCGC GCTGCTGCAC GAACCGCCCA TCCTCTTCCT CGACGAACCC
ACCTCCGGTG TCGATCCTCT GGCGCGCCGG GAATTCTGGC AGCGGGTCAA TGCCCTTGCC
GAGTCGGGTG TCACCGTAAT GATCACCACC CACTTTATGG ATGAAGCCGA ATACTGCGAC
AACCTGGTGC TGATGTCCCT CGGCGAAGTT CTCGCCCAGG GCAGCCCCGA GCAGGTGCGT
GCCCAGGCCA AAGATGCGGA GCATCCCGAC CCCAGCATGG AAGACGCCTT CGTTCTCCTG
ATCCAGGCCC ACGAAGGCCA GATCCGGAGG GCGTCATGA
|
|---|
| Protein sequence | MAEADTPLRF TEVSKSFARG PARVQALDRL EIALQAGTVT GLLGPDGAGK TTLMRLAAGL
LRPDTGIVTI LGADTRSQAN TIQREIGYMP QRFGLYEDLT VQENLDLYAD LQGLGREDAR
TRQQDLLKLT ALGPFGARRS GALSGGMKQK LGLACALLRA PQLLLLDEPT VGVDPIARRE
LWDIVQGLRD KGVTVLMSTA YFDEAERCDE IILLHQGKLL KKDTPKAFSA PLRGRCFLVT
NNATSKRHLR EALQARPGVQ DARILAEGVR VLCRTTAQPA ATEGEQWQPV DPAFEDAFVD
LLGAPVAAAA TAATTTPATA TSTPPQASAS AQPGQESAAK TVIEVRDLCK FFGHFEAVKG
NTFSVRKGQI FGLLGANGAG KTTTFRMLCG LLPASSGTLR VAGVDMRHAS GRARARIGYV
SQKFSLYGNL SCDQNLAFFS AAYGLRGTRR QDRLNWARQE FQLRDYRDVN ADDLPLGIKQ
RLALACALLH EPPILFLDEP TSGVDPLARR EFWQRVNALA ESGVTVMITT HFMDEAEYCD
NLVLMSLGEV LAQGSPEQVR AQAKDAEHPD PSMEDAFVLL IQAHEGQIRR AS
|
|---|
| |