| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2743 |
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| Symbol | dapF |
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| ID | 7136031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 2441606 |
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| End bp | 2442472 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643531098 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002427117 |
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| Protein GI | 218666260 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0353205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCCGCCC TGCGTTTTAC CAAAATGCAG GGCTTGGGTA ACGACTTCGT CGTTTTTGAT
GGCATCCGTC AGCGCGTCGA TCTACCCCCG GAGATGGTCC GCACCATCGC CGACCGCCAC
TTCGGCATCG GCTGCGATCA GATCCTGCTG GTGGAGGCCG CCGCATCCCC CGATTGCGAC
TTCCGTTACC GCATCTTCAA TGCCGATGGC ACTGAAGTGG CGCAGTGCGG CAATGGCGCC
CGCTGTTTTG CCGTCTTCGT GCGCCGCGCC AAGCTCACCG GCAAGGACAT CATCACCGTC
GAGACTCGGA CGGGGCGGCT GATCCTGCAT CACCGGGGAA ACGGAAATAT CACCGTCCAT
ATGGGTGTTC CGCGACTCGT CCCCGCCGAT GTCCCCTTCC GCGCCGATGA AGAATCCCCC
GAATACCTGC TGTCCGCGGG GAAGCACACC CTGCGCATCG CCGCCGTTGG CATGGGCAAC
CCCCACGCAG TGCTGCGTGT CGCGAGCGCG GCGGAGGCCC CGGTGGCCAC TCTGGGTCCG
CGCATCGAAA CACACCCGGC CTTTCCCGAG CGCTGCAACG TGGGCTTCAT GGAAATCCGC
GACCGCAACC ATATTCAACT GCGGGTCTGG GAGCGCGGCG CGGGTGAAAC CCTGGCCTGC
GGCAGCAATG CCTGTGCGGC CGTGGTGGCG GGCATCCGCT GGGATGAACT GGATCATGCG
GTGGCGGTGA CCCTGCCCGG GGGCACTCTG GAGATCGAAT GGGCGGGTCC TGGGCATCCC
GTGATGATGA CCGGTCCGGC GCAGGTGGTT TTCGACGGGG TTTGGCCGTT GCCGGCAAAG
ATCAGGCACA TTGAAGAGGG ATCATGA
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| Protein sequence | MSALRFTKMQ GLGNDFVVFD GIRQRVDLPP EMVRTIADRH FGIGCDQILL VEAAASPDCD
FRYRIFNADG TEVAQCGNGA RCFAVFVRRA KLTGKDIITV ETRTGRLILH HRGNGNITVH
MGVPRLVPAD VPFRADEESP EYLLSAGKHT LRIAAVGMGN PHAVLRVASA AEAPVATLGP
RIETHPAFPE RCNVGFMEIR DRNHIQLRVW ERGAGETLAC GSNACAAVVA GIRWDELDHA
VAVTLPGGTL EIEWAGPGHP VMMTGPAQVV FDGVWPLPAK IRHIEEGS
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