| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2681 |
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| Symbol | |
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| ID | 7136144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 2385104 |
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| End bp | 2387065 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643531038 |
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| Product | TPR domain protein |
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| Protein accession | YP_002427059 |
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| Protein GI | 218667728 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAATC GGTTTATGCT TAAAAGCGCG CTGCGTGCGC TCATCATGCA GTTGCTGAAA
ATGTACGTTG ACAGCCGTTT CGACACCCCT GAAACCATTG CCGCCATTCA GGCGGCGCGG
CGGAAGATTC ACGACCTCCA GGAAATGCTA CCAGACTTAC GGAGTGAAAT CCCGGCGCTG
GTGTCCGCCA TCTGGAATGA CGCAATAACG GATTTCCTGC TGGAACACGA TGATAGCATA
TCCCTGGATA TGAACCGCTG TCCGTGGAGT CTGGAACAGA TATTATCCAA CTGGCTGCCG
CGCTGGTCGA TGGTTCAGCG CGTGATCGGC GTGCGGGATA TGAATGGTAC GGATGGGGAC
TATCCGGAAG ACGAGCAGGT GTTGCGCAAC CTGTTGGCGT CCGATCCGCG ACACGCCCAG
GCCTGGTGCA ATCTCGCGGT GATGTATATG GGCAGACAAC GCAATGCGGA AGCAGAACGC
CTGTTTAAGC AATCTCTCGC GATAGACCCG GACTATCCTG AGGGCCTGCT GAATTACGCC
GTACTGCTGG AGAATCTCGA ACGCCGGGAC GAGGCCGAAA AGGCACTGCG CCGTGCCGTG
GAAATCCGCC CGGATTACTA CAAGGCATTT ACCAATCTCG GTTATGTGCT TAACCAGTTG
GAGCGGTATG AAGAAGCCGA GGTGATGCTG CGGCGCGCTT TGGAGATTAA TCCCGACTAT
ACGGTAGCAT TGCTGAACAT TTCTCTACCA CTGCATAAAC GCAAGGACTT TGCGGAATCC
GAGCAGTTTT TGCGGAGGGC GATGAATATT GATCCCCATT ATGAAGAAGC CGCGCTCAAT
CTTTTTGTCT GTTTATACGG GCTGGAAAAA CATGTCGAGG CAGAGGCGTT CCTGCGCCGA
TTCATCACGG ATAATCCGGG ATCTTCGGAG GCGATGAGCA AACTGGGGAT ATTTTTATTT
CATCAGGGCC GACCTGCGGA ATCCGAGGTC TGGTTACGGC GCGCTTATGA AGTCTCCGGC
GGCGCACCGG AAGCGGCCTT CGATCTGTCA TCCTATCTGC TTTTATATGG TCATTATCAG
GAGGGATTCG CATTATATGA GAGCCGTTTC GATGTGCGCT CCAATAATAA CGTGCGGCGT
TTTTCGGAAG CGCAGTGGGA CGGTTCACCG CTGGACGGAA GGCGTATCCT GATCTATACG
GAGCAGGGCT TCGGCGATCT GTTTCAGTGT GTGCGCTATG TTCCTTTGAT AAAAGCCCGT
GGCGGAAGGG TCATTCTGGA GGCGAGACCG GAAGTGCTGC GGCTTTTCCA GCAAGTGGAC
GGCGCGGATG AGGTGTTCGT GCGGGGCGAG CCGTATCCTG CCCATGACAC CTACTGCCCC
ATCATGAGTC TGCCCCACGT CATGGGCACC AGCCTGGACA CGGTGCCGGG CCGGGTGCCC
TATCTCCGCG TGCCGGTGGA ACTGCAGGAG TCGTGGCGCG AGAAGCTTGC GCAGATCGGT
GGCCTGCGGG TCGGCATCGT CTGGGCGGGG AATCCTTTGC ACAAAAATGA CGAAAGCCGG
TCACTGCCGT TGGCGGCGCT GGCGCCCCTG GCGGAGATTC CGGGAGTCAG TCTGCTGTCG
CTGCAAAAGG GCCATGGTGA ACGGCAACTA CAGGAGGTTT CTTTTGCCGT CACCCCGTTT
GGCGACCAGG TTCAGGACTT TGCCGACAGT GGCGCCATCC TCCAGCAACT CGATGTACTG
ATTTCAGTGG ACACCTCGGT GGCGCATCTG GCCGGCGCCC TGGGCGTCAA CACCTATCTG
CTGTTGCCGA ATTCGCCGGA CTGGCGCTGG TTGCTTGACC GGGACGACAC CCCCTGGTAT
CCGGGTATGC GTCTGTTCCG GCAGGCCAAG GCGGGCGTAT GGGATGATGT GCTCGCCTCG
GTGGCGGAGT CTGTCCGATC TTTAAGCGCC GCCAGGAGAT GA
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| Protein sequence | MLNRFMLKSA LRALIMQLLK MYVDSRFDTP ETIAAIQAAR RKIHDLQEML PDLRSEIPAL
VSAIWNDAIT DFLLEHDDSI SLDMNRCPWS LEQILSNWLP RWSMVQRVIG VRDMNGTDGD
YPEDEQVLRN LLASDPRHAQ AWCNLAVMYM GRQRNAEAER LFKQSLAIDP DYPEGLLNYA
VLLENLERRD EAEKALRRAV EIRPDYYKAF TNLGYVLNQL ERYEEAEVML RRALEINPDY
TVALLNISLP LHKRKDFAES EQFLRRAMNI DPHYEEAALN LFVCLYGLEK HVEAEAFLRR
FITDNPGSSE AMSKLGIFLF HQGRPAESEV WLRRAYEVSG GAPEAAFDLS SYLLLYGHYQ
EGFALYESRF DVRSNNNVRR FSEAQWDGSP LDGRRILIYT EQGFGDLFQC VRYVPLIKAR
GGRVILEARP EVLRLFQQVD GADEVFVRGE PYPAHDTYCP IMSLPHVMGT SLDTVPGRVP
YLRVPVELQE SWREKLAQIG GLRVGIVWAG NPLHKNDESR SLPLAALAPL AEIPGVSLLS
LQKGHGERQL QEVSFAVTPF GDQVQDFADS GAILQQLDVL ISVDTSVAHL AGALGVNTYL
LLPNSPDWRW LLDRDDTPWY PGMRLFRQAK AGVWDDVLAS VAESVRSLSA ARR
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