Gene AFE_2534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_2534 
Symbol 
ID7136865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp2252628 
End bp2253794 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content63% 
IMG OID643530890 
Producthistone deacetylase family protein 
Protein accessionYP_002426914 
Protein GI218666286 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGCC CACAGATCGC CGCGACCCGC CCAGCGGTTT TCGTCGGGGC GGCGCGTTAC 
CGGCGGGCGA GTTATGGGAG TAACCATCCC CTGGCGATTC CGCGGGTCTC CCTGACCCTG
GACCTCATCA ACAGTTACGG GGCCATGGCG CCGGAAGAAT ACCGGCAGGG CCGCCCGGCG
AGCCATCGGG AACTCTTCGG CTTTCATACG AAAGAGTACA TACAGGCCTT TGAGCGGGCG
CAGTTTCGTG GTGGTGTACA GGATAGCGAT CGTCAGCGTT ATCAGTTGGG TACGCTGGAG
AATCCCTATT TCCCCGGTTT TTTCGACACG CCCTCCCTGG CTACCGGTTC CAGCGTGCTC
GCGGCGGAAG CCGTGCTAGA AGGCGTAACT GCCTTCAGCC CCGCGGGCGG AATGCACCAT
GCCGCACCGG GTCAGGCGCG CGGCTTCTGC TACCTCAACG ATCCGGTGCT CGCCATTCAG
CGTCTGCGCC GCGCCGGTCT GCGGGTGCTG TACTGGGACA TGGATGCCCA CCACGGTGAC
GGGGTGGAGG CGGCCTTTGT GGAGGATCCG GACACGCTGA CGGCCTCCCT GCACATGGAT
ACGGACTACG CCTATCCCTT TCTGGGCGGC AAGCTCACCG ACTGGCCGGG GCTGGCGGTT
AATCTGCCTT TGCCCAAAGA GGTGAATGAC AGTGAATATG CGCTGGCTTT TGCGGAGTTA
TGGCCTCGTG TCTTGCAGCG TTTCAGCCCA GATGTCGTCG TTCTGCAGGC GGGCACCGAT
ATCCTCGCAC CGGATCCTTT GAGCAAGTTT CGGGTCTCCA ACGGCTTATT CTGGCAAGTC
GTGCGCCAGA TCACGGCGGA AAGCCCGCGT CTGCTGGCCC TGGGCGGGGG TGGTTATCAT
CCCGTTGCTT TGGCGCGCTG CTGGGCCGGT CTCTGGGCGA TTCTCAGCGG TCGCTCGTTA
CCCGCAGAAT TGCCCGCATC CGGGCAAGCA TTGCTCCAGG CGGTCGAATG GGAACTGGAC
GATGAGGATG CGCCAGACTA TCGTCAGCAG TTCCTGAGTC TGGAAGATGC GGCCCGGCCC
GGCCCGGTGC GTGCCGAGTT GCGTGAACGC CTGGATTTTT TGCTGCACCA CCATCCCCTC
TTTGCCAACA GGAGTAACGC TGCGTGA
 
Protein sequence
MLRPQIAATR PAVFVGAARY RRASYGSNHP LAIPRVSLTL DLINSYGAMA PEEYRQGRPA 
SHRELFGFHT KEYIQAFERA QFRGGVQDSD RQRYQLGTLE NPYFPGFFDT PSLATGSSVL
AAEAVLEGVT AFSPAGGMHH AAPGQARGFC YLNDPVLAIQ RLRRAGLRVL YWDMDAHHGD
GVEAAFVEDP DTLTASLHMD TDYAYPFLGG KLTDWPGLAV NLPLPKEVND SEYALAFAEL
WPRVLQRFSP DVVVLQAGTD ILAPDPLSKF RVSNGLFWQV VRQITAESPR LLALGGGGYH
PVALARCWAG LWAILSGRSL PAELPASGQA LLQAVEWELD DEDAPDYRQQ FLSLEDAARP
GPVRAELRER LDFLLHHHPL FANRSNAA