Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2534 |
Symbol | |
ID | 7136865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 2252628 |
End bp | 2253794 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643530890 |
Product | histone deacetylase family protein |
Protein accession | YP_002426914 |
Protein GI | 218666286 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCGCC CACAGATCGC CGCGACCCGC CCAGCGGTTT TCGTCGGGGC GGCGCGTTAC CGGCGGGCGA GTTATGGGAG TAACCATCCC CTGGCGATTC CGCGGGTCTC CCTGACCCTG GACCTCATCA ACAGTTACGG GGCCATGGCG CCGGAAGAAT ACCGGCAGGG CCGCCCGGCG AGCCATCGGG AACTCTTCGG CTTTCATACG AAAGAGTACA TACAGGCCTT TGAGCGGGCG CAGTTTCGTG GTGGTGTACA GGATAGCGAT CGTCAGCGTT ATCAGTTGGG TACGCTGGAG AATCCCTATT TCCCCGGTTT TTTCGACACG CCCTCCCTGG CTACCGGTTC CAGCGTGCTC GCGGCGGAAG CCGTGCTAGA AGGCGTAACT GCCTTCAGCC CCGCGGGCGG AATGCACCAT GCCGCACCGG GTCAGGCGCG CGGCTTCTGC TACCTCAACG ATCCGGTGCT CGCCATTCAG CGTCTGCGCC GCGCCGGTCT GCGGGTGCTG TACTGGGACA TGGATGCCCA CCACGGTGAC GGGGTGGAGG CGGCCTTTGT GGAGGATCCG GACACGCTGA CGGCCTCCCT GCACATGGAT ACGGACTACG CCTATCCCTT TCTGGGCGGC AAGCTCACCG ACTGGCCGGG GCTGGCGGTT AATCTGCCTT TGCCCAAAGA GGTGAATGAC AGTGAATATG CGCTGGCTTT TGCGGAGTTA TGGCCTCGTG TCTTGCAGCG TTTCAGCCCA GATGTCGTCG TTCTGCAGGC GGGCACCGAT ATCCTCGCAC CGGATCCTTT GAGCAAGTTT CGGGTCTCCA ACGGCTTATT CTGGCAAGTC GTGCGCCAGA TCACGGCGGA AAGCCCGCGT CTGCTGGCCC TGGGCGGGGG TGGTTATCAT CCCGTTGCTT TGGCGCGCTG CTGGGCCGGT CTCTGGGCGA TTCTCAGCGG TCGCTCGTTA CCCGCAGAAT TGCCCGCATC CGGGCAAGCA TTGCTCCAGG CGGTCGAATG GGAACTGGAC GATGAGGATG CGCCAGACTA TCGTCAGCAG TTCCTGAGTC TGGAAGATGC GGCCCGGCCC GGCCCGGTGC GTGCCGAGTT GCGTGAACGC CTGGATTTTT TGCTGCACCA CCATCCCCTC TTTGCCAACA GGAGTAACGC TGCGTGA
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Protein sequence | MLRPQIAATR PAVFVGAARY RRASYGSNHP LAIPRVSLTL DLINSYGAMA PEEYRQGRPA SHRELFGFHT KEYIQAFERA QFRGGVQDSD RQRYQLGTLE NPYFPGFFDT PSLATGSSVL AAEAVLEGVT AFSPAGGMHH AAPGQARGFC YLNDPVLAIQ RLRRAGLRVL YWDMDAHHGD GVEAAFVEDP DTLTASLHMD TDYAYPFLGG KLTDWPGLAV NLPLPKEVND SEYALAFAEL WPRVLQRFSP DVVVLQAGTD ILAPDPLSKF RVSNGLFWQV VRQITAESPR LLALGGGGYH PVALARCWAG LWAILSGRSL PAELPASGQA LLQAVEWELD DEDAPDYRQQ FLSLEDAARP GPVRAELRER LDFLLHHHPL FANRSNAA
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