Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2522 |
Symbol | |
ID | 7134786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 2242136 |
End bp | 2243392 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643530878 |
Product | carbohydrate-selective porin, OprB family |
Protein accession | YP_002426902 |
Protein GI | 218665199 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0118751 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCCGTC TTTTTCATCC GGCCACTGCC GTGCTCATCA TCTGCGCTGG CACTTTCGGG CCATTTTCCG GTATCTGGGC GGCGGAGAAT CCAGCGACCC GGGGAAACGG CCCTATCCCC GATACAACCG GCCTTTCTCC CAAATATTTG CCCGCTTACC GTCATCTGAT AGACGGTATC TCCTGGGCTG GGCATGCCGA CAGTGAGCTA TTTTCCAACC TCAGCGGCGG CATTCGCCGG GGCAGCGAGG GCAACCTTGC CGGCCAGATT GGTGGCGAGT ACGACACCGA GAAGGCCGGT CTCTGGAAGG GCGGCAAATT TAGCCTCTCC CTCATGGGCA TTTATAGCAG CAAAGTCCAG CAAAATTATA GCGGCGACAT CCAGACGGCC AGCAACATCT GGGCACCTGA CGCGATTCGT TTTTACGATG CCGCCTTTCG CCAACGCTGG ACGGACTGGC TCAACACCCG TGTCGGTTAC ATGGATGTGA ATTATTACTT CGACGTCACT GCCAATGCCT TGCAGCTCAT CAACAGCTCC TTTGGCATAA CGCCGACCAT GACCGTCAAT GTCCCGGGTA CCGCCACCTA TCCTTATTCG GGCCTAGGGT TCCTGGTGGG CATCCATAAC GAGCACCTGA GCAGCAAGGT TGCAGTATTT CAGGGCGACC CACAGCACCA GACCTCCGCC TTCGATCGCG GCTACATGGC GTTGTGGGAA GGTGGCCTGC ACTGGGGCAA AAAAGATGAC GAGGATCTGG AGGACAATAC CGACAATTAC GGCAGGTATA TACTCAAAAT AGGTGGTTGG CATTATCAAC AATCCAACCC TGACCTCTAC GGGCTTTCCC CGACCACCTC CGGCATCTAT GCCGTGGCCG AGGGCAATTG GGATCTATCT GGAGAACGGG AACTGGGCGC TTTTATCCAG ATGGGCGGTG CGCCGCAGAA CTTCAATCCA GTACCTTGGT ATCTGGGCAT CGGTTTGCGC CTGGGCCATC CCTTCGCCAG TCGGCCGGAT GACAGCCTGT CCGTGGGCAT GGCTAAGGCA TGGCTACGCT CCGGACCCGT GGCGGATGCC CTGGGTGTGA AGCCCGCGGA TATCCGCGGC GCGGAAACGT CCTATGAATT GACCTACGTG GCGAAACTTA CGGAGCATGT CAGTCTGCAG CCGGACCTTC AGTATATTCA GCACCCCAAT GGCTATTATC CGGATAGCAC CGTTGGCCTT CTGCGCGTAC ATGTTGAATT CTTCTGA
|
Protein sequence | MPRLFHPATA VLIICAGTFG PFSGIWAAEN PATRGNGPIP DTTGLSPKYL PAYRHLIDGI SWAGHADSEL FSNLSGGIRR GSEGNLAGQI GGEYDTEKAG LWKGGKFSLS LMGIYSSKVQ QNYSGDIQTA SNIWAPDAIR FYDAAFRQRW TDWLNTRVGY MDVNYYFDVT ANALQLINSS FGITPTMTVN VPGTATYPYS GLGFLVGIHN EHLSSKVAVF QGDPQHQTSA FDRGYMALWE GGLHWGKKDD EDLEDNTDNY GRYILKIGGW HYQQSNPDLY GLSPTTSGIY AVAEGNWDLS GERELGAFIQ MGGAPQNFNP VPWYLGIGLR LGHPFASRPD DSLSVGMAKA WLRSGPVADA LGVKPADIRG AETSYELTYV AKLTEHVSLQ PDLQYIQHPN GYYPDSTVGL LRVHVEFF
|
| |