| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2434 |
|---|
| Symbol | |
|---|
| ID | 7135946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2179096 |
|---|
| End bp | 2180397 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643530796 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002426820 |
|---|
| Protein GI | 218666932 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.990538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAAGAA GTTCTGGAAA TAAATATTTT CTAAAGTGGG TTGCGGCTAT TCGCAGGGGC
GCAGAGCTAC TCTCCCTTCC CGTCATGCTG ATGATGGTGT TTAGCCCTTA TGCCAGTGCC
GTCTCATTGA GCCTGCAGAG CGCAGAGGCG ATCGCCCTGC GGCAAAATCC CGGTCTCGGC
GCCCTGACCC AAAAGATCGC GGAATTGCGG CACCAAGCGG TGGCGGTAGC CCAACTCCCC
GATCCGCACC TCGCCCTCGG TGTGGTCAAC GCACCCCTCA ACAACTTCTC CATGAACCAG
CAGCAGATGA GCATGCTGAG CGTGGGCCTG AGCCAGACTT TTCCCTCCTT TGGCAAACTG
GGGCTGGAAG GGCAGCAGGC AGGGGTGGAA GCCCAGGCGG CGGCCGATAC CCTGCGCGGC
CAGTCTGCCG AGTTGGTGTT ATTGCTGCGC CGCGCCTGGC TGCAAGCCCT CTATGCCGAA
GATGCGGTAG CAACGGTCCG ACATCAGGAA CAGTTGCAGA CAGAGAGCGT GCAAGCGGCG
CTGGCACTCT ATCGCTCCGC GCAAGGGTCA CAGGCCGATG TACTCCGCGC ACAACTGGCG
CGCGACAGCC TAGCCAATGA TATCAATCAA TTACAGGCGG AGCAGGCGAG CGATCTGGCG
CAAATCGCGC AGATCCTGGA TCTACGGAAA CCGCCGTCCA TAGAAAAGCA ATGGCCGAAC
CTGCCACCCC CGCCCACCCT TGCCCAAGCG GAAGCCCGGC TTTCCGGCCA ACCCCTCCTG
CGGTCCGCCC AGGCGCAAAC GCGCGCCGCG CAAATTGGCG TGCAGGTGGC CAAGCGTGGC
TATTGGCCGG AAGTCACGGT CAGCGTCGAT TATGGCCAGG ATTTCTACCC CGGCAGCCCC
AACTGGCTGT CAGCGGGGGT CAACCTGAGC CTGCCCATAT TTCCGGGAGA TCGCCAGGAC
CAGGACGTCG CCGCCGCCCG GGCCAAGGCA CTGCAGGCGC AATATCGCTA CGACGATCAG
CACCTTGCCT TGACCCAGCA GGCGCGCACC ACCTTCGCCC GTTATGAAGC CCTCAAGGCC
CGGTTGGAGC GCACCGATCG GCAACTGCTT CCCACCGCCC GGAATGCCTT TTCCGCGACG
CTCGCCGCCT ACGCGGCGGG ACGTGCCGAA CTGAGCGCGG TGCTGCGCAC CCAGAAAGAA
GTGCTGGACT ATGCTCTGAC CCGCCTGCAA TACCGCCGCG ACCTGGACCT CAGCGCCGCA
GAGCTGGATT TCCTCACCAC CCAAGGAGCA ACGCAACCAT GA
|
|---|
| Protein sequence | MQRSSGNKYF LKWVAAIRRG AELLSLPVML MMVFSPYASA VSLSLQSAEA IALRQNPGLG
ALTQKIAELR HQAVAVAQLP DPHLALGVVN APLNNFSMNQ QQMSMLSVGL SQTFPSFGKL
GLEGQQAGVE AQAAADTLRG QSAELVLLLR RAWLQALYAE DAVATVRHQE QLQTESVQAA
LALYRSAQGS QADVLRAQLA RDSLANDINQ LQAEQASDLA QIAQILDLRK PPSIEKQWPN
LPPPPTLAQA EARLSGQPLL RSAQAQTRAA QIGVQVAKRG YWPEVTVSVD YGQDFYPGSP
NWLSAGVNLS LPIFPGDRQD QDVAAARAKA LQAQYRYDDQ HLALTQQART TFARYEALKA
RLERTDRQLL PTARNAFSAT LAAYAAGRAE LSAVLRTQKE VLDYALTRLQ YRRDLDLSAA
ELDFLTTQGA TQP
|
|---|
| |