| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2372 |
|---|
| Symbol | |
|---|
| ID | 7134070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2117769 |
|---|
| End bp | 2119382 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643530737 |
|---|
| Product | type I restriction-modification system, M subunit |
|---|
| Protein accession | YP_002426761 |
|---|
| Protein GI | 218665706 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.728855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC AAAATCAAAA ACAATTGGGC AACACCCTCT GGAGCATCGC CGACCAACTG
CGCGGGGCGA TGGATGCGGA CGACTTCCGC GACTACATGC TGTCCTTCCT CTTTTTGCGC
TACCTCTCCG ACAACTACGA GACGGCGGCG AAGAAGGAAC TGGGGCGCGA TTACCCGGAT
GTGGGCGGCG ACGCGCGCAA GGTGCCGCTG GCGCTCTGGT ATGCGAACAA CGTGGACGAC
ATTCCGGCCT TCGAGAAGCA GATGCGGCGC AAGGTGCATT ACGTCATCCA GCCCGCGCAC
CTCTGGAATA GCATCGCTAA CCTGGCTCGC ACTCAGAACC CGGACCTGCT AGACACCTTG
CAGGCTGGCT TCAAATACAT AGAGACAGAG TCTTTTGAGA GCACTTTCCA GGGGCTGTTC
TCCGAAATTG ATCTGAGCTC GCCCAAGCTG GGCAAGAGCT ACAGCGACCG TAACGCCAAG
CTCTGCACCA TCATCCAGAA GATCGCCGAA GGGCTGGCGG CGTTCTCCAC GAACATCGAC
GCGCTGGGCG ATGCCTACGA ATACCTGATC GGCCAGTTTG CCGCAGGCAG TGGCAAGAAG
GCGGGCGAAT TCTACACCCC GCAGCAGATT TCCGACATTC TTTCCGCCAT CGTCACGCTG
GACAGCCAGG AGCCGAAAAC CGGGACGAAG AAGCGGCTGG ACAGCGTGCT GGACTTCGCC
TGCGGCTCCG GCTCGCTGCT GCTGAATGTG CGCAAGAAGG TGAACCAGGC GGGCGGCAGC
ATCGGCAAAA TCTACGGCCA GGAAAAGAAC ATCACCACCT ACAACCTCGC GCGCATGAAC
ATGCTGCTGC ACGGGGTGAA GGACACCGAG TTCGAGATCT TCCACGGCGA CACCCTGCTC
AACGAGTGGG ACATGCTGCG CGAGCAGAAC CCGGCCAGGA AGCCGAGCTT CGACGCCGTC
GTCGCCAACC CGCCTTTCAG CTACCGCTGG GAGCCCACCG ACGCGCTGGC CGACGATGTG
CGCTTCAAAA GCCACGGCCT CGCGCCCAAG TCCGCCGCCG ACTTTGCCTT CCTGCTGCAC
GGCTTCCATT ATCTGAAAGA CGAAGGGGTG ATGGCGATCA TCCTGCCGCA CGGGGTGCTG
TTCCGGGGCG GGGCCGAGGA ACGCATCCGC ACCAAACTGC TCAAGGACGG CCATATCGAC
ACCGTCATCG GCTTGCCCGC GAACCTGTTT TATTCCACCG GCATCCCGGT CTGCATCCTC
GTGCTGAAGA AGTGCAAGAA GCCCGACGAC GTGCTGTTCA TCAACGCCGC AGAGCACTTT
GTGAAAGGCA AACGCCAGAA CCATCTTTCG GACGAGCACA TCGCCAAGAT CATCGAAACC
TACCAGTTCC GCACGGAAGA ACCGCGCTAC GCCCGCCGCG TGGACATGGC GGAGATTGAG
AAAAACGACT TCAATCTCAA TATTTCGCGG TATATCAGCA CAGCAGTAGA CGAGGAGGAA
ATTGACCTGA CGGCGACGCA CGCAAACTTG GTGAACATCG AGAAGGCCAT CCAGCAAGCG
ACTGCGAAAC ACAACGAATT TCTGAAAGAG CTGGGCATGC CGCTGTTACC TTAG
|
|---|
| Protein sequence | MTEQNQKQLG NTLWSIADQL RGAMDADDFR DYMLSFLFLR YLSDNYETAA KKELGRDYPD
VGGDARKVPL ALWYANNVDD IPAFEKQMRR KVHYVIQPAH LWNSIANLAR TQNPDLLDTL
QAGFKYIETE SFESTFQGLF SEIDLSSPKL GKSYSDRNAK LCTIIQKIAE GLAAFSTNID
ALGDAYEYLI GQFAAGSGKK AGEFYTPQQI SDILSAIVTL DSQEPKTGTK KRLDSVLDFA
CGSGSLLLNV RKKVNQAGGS IGKIYGQEKN ITTYNLARMN MLLHGVKDTE FEIFHGDTLL
NEWDMLREQN PARKPSFDAV VANPPFSYRW EPTDALADDV RFKSHGLAPK SAADFAFLLH
GFHYLKDEGV MAIILPHGVL FRGGAEERIR TKLLKDGHID TVIGLPANLF YSTGIPVCIL
VLKKCKKPDD VLFINAAEHF VKGKRQNHLS DEHIAKIIET YQFRTEEPRY ARRVDMAEIE
KNDFNLNISR YISTAVDEEE IDLTATHANL VNIEKAIQQA TAKHNEFLKE LGMPLLP
|
|---|
| |