| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2360 |
|---|
| Symbol | |
|---|
| ID | 7136026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2107178 |
|---|
| End bp | 2107831 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643530725 |
|---|
| Product | channel protein, hemolysin III family |
|---|
| Protein accession | YP_002426750 |
|---|
| Protein GI | 218666490 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGA ATTCGGACGG CATGGTGCGG GATCAGACCC GTGTTGAAGA GTGGATTAAC
AGTCTGCTGC ATGGCGCAGG CGCGGTCGGT GCCGCGCTGG TTTTTGTGCT GTGGATCGTT
GGCGCAGGTC TCCACAGTAC CCCTCTCGCG GTAATCACCA TCAGTATATT CGTGGTGACC
ATCGTGATGC TGTACGGCGC TTCGACCATT TATCACATTC TGCCGTCGGG GCGACTTAAA
CGGGCTTTCC AGTTGGTGGA CCGATCCGCG ATCTATCTCC TTATTGCCGG CACTTACACC
CCGGTGACGC TGATGGTGCT CCATGGCTCG TGGGGTTGGG TGCTGCTGAC CGTGGAGTGG
GGCCTTGCGG CGCTGGGCAT CACTCTGCTG GCCATGGCAG GGACGCGCGC GCAATCGATT
TCTCTCTGGC TCTACCTCCT CATGGGCTGG CTGGCGGTAT TCGCCGCCGT GCCGCTCTAT
AATTCCGCAC CCGGCTGGTT TTTGTGGTGG CTGGCCGCTG GCGGGCTGGC CTATACCATA
GGCGTCCTCT TTTTTCTGCT GGATCGCTGG AAATATTTCC ATTCCATCTG GCATGTTTTT
GTCATCGCGG GTACGGCGCT GCAGTTCTGG GCTATTCTTC AATATGCTGG CTGA
|
|---|
| Protein sequence | MDLNSDGMVR DQTRVEEWIN SLLHGAGAVG AALVFVLWIV GAGLHSTPLA VITISIFVVT
IVMLYGASTI YHILPSGRLK RAFQLVDRSA IYLLIAGTYT PVTLMVLHGS WGWVLLTVEW
GLAALGITLL AMAGTRAQSI SLWLYLLMGW LAVFAAVPLY NSAPGWFLWW LAAGGLAYTI
GVLFFLLDRW KYFHSIWHVF VIAGTALQFW AILQYAG
|
|---|
| |