Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2250 |
Symbol | |
ID | 7136175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 1997955 |
End bp | 1999076 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643530618 |
Product | carbohydrate-selective porin, OprB family |
Protein accession | YP_002426648 |
Protein GI | 218667547 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGATT TATATAACCG GTGTCGCGCA TGTCGTCCAG TTTGCCTGGT AGCACTTGCT TTAACCTGCC TGTCGGCATC GCCATCCATA GCCGAGGCGA ACAATCTGCG CTCGGCGGTT TCCTGGAATC TGCACCTCAG TCTGGAGGGT ATCGACAATT TCTCCGGAGG AATCGCCCCG GGCGCCGTGG GTAATGCTAC GGCTAGGGCG GGTTTTGCCT TCAATACCCG TCGCGCCGGT TGGTGGACCG GCGGGCGATT CGTCGCACAG TTTCTGGCCA TTCAGAATGG CAATCCGGAG CACTACGTGG GCGATACCCA AGGGGTTAAT GCCTTTACCG GGCTTAATCG GGGCGCGTTC TATCAACTGT ACTACCGGCA AAATATAGAT AATGCCACGT TGAGGGCAGG ACTCATCAGT GCCAATGATT ATTTCGATTC CACCGGTGTA GCGAGTAATT TCCTGAATGT TTCTTATGGG TTTGGCTCCG CTATGGGAAT CAATGTTCCA GGAGCTTCTT CTTACCCATT TTCCAGCCTT GGAGTGATGG GAAGCTATAG CGCTGACGGC TGGACGGGAA TGGCCGGCAT TTTCGAGGGA GATGCCATTC ATCCTTTCAA GGATCCTACG CATCGTGGAA ACATGATCTG GCTGGAGGCC GACAAGAGTG GTTCTCTGGG TGATGGAAAA TATACGGTGA AAGTGGGCGG GTGGCGTAAC CGCCAGTTGC CACAGTATCA GGCAACGCTG GGTAATGACA CTAGTGGTAT GTATACCACG GGAGAATATC GCTGGGAGAT GGACGGTATG GATTGGGGCA GTTTTTTGGA GTTCGAAGCT GCGCCTAATC CGGTGAATCT TCTGCCTTGG TATATGGGTG CCGGGTTGCG CCTGAAACAC TTCTGGGCGG TGCGCCCGGG GGATAGTGCG GGTATCGGCA TGGCCCGGGC ATGGTTGAGG GGCGCTCCTT ATAATGCGGA GACAGACTTT GAGGGATATT ATTCTGCGCG GATAATCCGT CGGTTATATC TACAAACAGA CATTCAGTAT GTCGTCCATC CCAGCGCAAT ATACCAGAAT GCGCTGGTCG GTATCGTGCG CCTGCATGTC ACTTTTTCCT AG
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Protein sequence | MNDLYNRCRA CRPVCLVALA LTCLSASPSI AEANNLRSAV SWNLHLSLEG IDNFSGGIAP GAVGNATARA GFAFNTRRAG WWTGGRFVAQ FLAIQNGNPE HYVGDTQGVN AFTGLNRGAF YQLYYRQNID NATLRAGLIS ANDYFDSTGV ASNFLNVSYG FGSAMGINVP GASSYPFSSL GVMGSYSADG WTGMAGIFEG DAIHPFKDPT HRGNMIWLEA DKSGSLGDGK YTVKVGGWRN RQLPQYQATL GNDTSGMYTT GEYRWEMDGM DWGSFLEFEA APNPVNLLPW YMGAGLRLKH FWAVRPGDSA GIGMARAWLR GAPYNAETDF EGYYSARIIR RLYLQTDIQY VVHPSAIYQN ALVGIVRLHV TFS
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