| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2229 |
|---|
| Symbol | kdpD |
|---|
| ID | 7136911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1982807 |
|---|
| End bp | 1985548 |
|---|
| Gene Length | 2742 bp |
|---|
| Protein Length | 913 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643530597 |
|---|
| Product | sensor histidine kinase KdpD |
|---|
| Protein accession | YP_002426627 |
|---|
| Protein GI | 218666729 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACTG AAGATCGCAA AGATGGGCGA CCCGATCCGG ATGCCCTGTT GGCACAGGTG
CAACAAGAGG AGCAGGCGCG TCAGCGCGGT CGCCTCAAGA TTTTTTTTGG CGCCGCTCCA
GGCGTTGGGA AGACCTACGC CATGTTGCGC TACGGGCAGC AGGAGATGGC CAAGGGGGTG
GACGTTTTGG TGGGCATCGT CGAAACCCAC CAGCGCAGTG AAACCCAAAC GTTGGCCGAT
GCCCTGCCGA CGTTACCGCG AGTGCATCTT GCTTATAAAA ACGTTGTGCT TGAAGAGTTT
GATCTGGATG CGGCCCTTGC CCGTCGTCCC GGACTGCTCC TGCTGGACGA ACTCGCCCAT
AGCAACGCCC CCGGCTCTCG CCACAAGAAG CGCTGGCAGG ATCTGGAGGA ACTGCTGGAC
GCGGGTCTTT CCGTGGCGAC CACCGTGAAT GTTCAGCACC TGGAGAGTGT CCACGAAGTC
GTCCAGCAGA TTACCGGGAT ACAGGTTCAG GAGACCCTGC CGGATCAGAT CATTCAGCAG
GCCGATGAAG TGATTCTGGT AGATATCAGT GACGAGGATC TTTTGCAACG GCTGAAGGAG
GGTAAGGTGT ACCTGGGCGA TCGCGGTCAG CGCGCGATGA CCCATTTTTT CCGTAAAGGC
AACCTCATCG CCCTGAGGCA ATTGGCATTG CGACTGGCAG CGGACCGGGT TGATCTGGAG
TTGCGACAGT TTCATCAACA GAATCCGGAG GAGGGGCGAC GTAGCGGTAG CCGGGATCGT
TTGCTGGTAG CCGTAAGTGG CCGCCCGGAA GATGAGCATC TGGTGCGCGC GGCATATCAC
CTGGCGACCG CCCAACGGGC TGACTGGCTG GTGATTCATG TGGACACTCC ACGCGGCCTG
CTGCAGAGAC CCCAGACCCA GGCATGGATA TGGAATCACC TGCATCTTGC GGAAAGTTTG
GGTGCGGAAA CCGCACGTCT GACCGGAGTA AATATCGGCG CGGAGGTTTT GGCTTATGCG
CGGCTGCGCG ACGTCACCCA GATTGTACTG GGACAGACCC AGGGCCTGCG CAAATTCCTT
TGGTGGTGGC CCGGGTCTTT GACGGCCCAT CTGTTGAACA GCGAGCGCGG CATCGATGTG
GTAATCCATC CATTACCGGT TAAAAAAGCC ATTCCCGAAG ATCGACGCCT GCGGAATCAA
CAATACCTTG GCATTGTGGA CACGCCCCTG CGCCGCCGCA CTCGGAATCG CGCCTTTGTG
ATCAGCGGAA CAATAGGTCT CGCCTTAAGC GGTCTGGCCT GGTCTCTGGG GGCTTACCTG
GGTTTCGCCG GAGTGTTCAT GCTCTACATG CTGGGCGCGG TGGGCACCGC CCTGATGTAC
GGCCGCTGGC CCTCCCTCAT CACGTTCATT GCCGCCGTGG TTAGCTACTA CTCGTTTGGG
TTGGATCGCG GTCTGCCAAC CACGGTGGGC TCGCTTGCTT ACTTTGCACT GATCCTCTCT
CTGATCCTGC TCATCAGCCA ACTGGTGGCG CGATCCCGCG AGCAGGAACT CATGGCCCGG
ATCCGCGAGC GACGTGCCCG CAACCTCTAT CAACTGGTTC AGGCGCTCAG CAGTGCCCGT
GGCGTCGAGG GGATTCTGAA CGCCAGTATC GAGAAGTTGC ACCAGACCCT GGGTATTGCG
GTCGCATTCT GGCTGCCGCT GGTGGACAAC GCGGGTGGTC CTTTGCAGAT GTTTCCAGCG
TCCACCGACC TGGAAGCTCC ACAACGCAAC CTGCGGGCTG CCGCCCGGTG GAGCTTTCTG
AATAAAAAGA ACGCCGGGAT GAGCACCGAC ACGCTGGCGG ATATTCCGGC ACTGTTTATG
CCCATGCTGT CCGGCGAGCG TGCGCTGGGG GTCATGATGC TGTCGGATCT CGACCTGCGT
CGGGCTCCTG TCGACTGGTT GCGCTTTCTC GAAACAGTAG CGCGACTCAT CGCGGTGGCT
CTGGATTCGG CGCAAGCTTC TCTTCAACGA ACGGAAGCCG ATGTCCGTTT GCGGGTCGAG
CAATTACAAA ATGCGCTTTT GGGCGCCGTT TCCCATGACC TCCGGACGCC CCTGGCTGGT
GTACTGGGCA CCGCGACGAC ACTCCAGCGC AATGCGCAGG GCTTGACGGC CGAGGAGCAT
GATCTCCTGG AGAATATTCG TGAGCAAACC CAAAAGATGG AACACACCGT GGACCGCATT
CTGCATATGG CCGCATTGCA GTCCGGGCGA CTCCATATCA AAAAAGAATG GGTTCCCCTG
GAAGACCTGC TGGTCACCGC ACGCGATCAG GTTAAGGCCG TATGCGCTGA TCGTCCTTTT
CAGGTGCGGA TCTCCAAAGA CCTGCCATTA CTTCTCGTGG ATCCGCAACT TATGGTGCAA
GTGCTCACTA ACCTGCTGGA AAATGCTTGT AGATATAGCC CGAGTGGTCG CGCTATCGAG
CTAGAAGCCT ATGCGAACGA TGCGGAAATT ACTGTTTGCG TCATTGACCA CGGCTTTGGC
GTACCACCCG GCCGCGAAGA GGAGATATTT CTTCGCTTCA GCCAGGTCAA ACCGCCCCAT
GGACTGGGTG GCAGCGGACT GGGCCTCGCC ATTTGTGCTG CTATCATAGA GTTGCATGGC
GGACGTATCT GGGTGCGTAA CCGGGTTGCA GTGCGTGGTG CGGTTTTTTG TTTTACCGTT
CCTCGGGAGC CTGAGCCGCC TATGCCGTCT GACGGAGATT AA
|
|---|
| Protein sequence | MATEDRKDGR PDPDALLAQV QQEEQARQRG RLKIFFGAAP GVGKTYAMLR YGQQEMAKGV
DVLVGIVETH QRSETQTLAD ALPTLPRVHL AYKNVVLEEF DLDAALARRP GLLLLDELAH
SNAPGSRHKK RWQDLEELLD AGLSVATTVN VQHLESVHEV VQQITGIQVQ ETLPDQIIQQ
ADEVILVDIS DEDLLQRLKE GKVYLGDRGQ RAMTHFFRKG NLIALRQLAL RLAADRVDLE
LRQFHQQNPE EGRRSGSRDR LLVAVSGRPE DEHLVRAAYH LATAQRADWL VIHVDTPRGL
LQRPQTQAWI WNHLHLAESL GAETARLTGV NIGAEVLAYA RLRDVTQIVL GQTQGLRKFL
WWWPGSLTAH LLNSERGIDV VIHPLPVKKA IPEDRRLRNQ QYLGIVDTPL RRRTRNRAFV
ISGTIGLALS GLAWSLGAYL GFAGVFMLYM LGAVGTALMY GRWPSLITFI AAVVSYYSFG
LDRGLPTTVG SLAYFALILS LILLISQLVA RSREQELMAR IRERRARNLY QLVQALSSAR
GVEGILNASI EKLHQTLGIA VAFWLPLVDN AGGPLQMFPA STDLEAPQRN LRAAARWSFL
NKKNAGMSTD TLADIPALFM PMLSGERALG VMMLSDLDLR RAPVDWLRFL ETVARLIAVA
LDSAQASLQR TEADVRLRVE QLQNALLGAV SHDLRTPLAG VLGTATTLQR NAQGLTAEEH
DLLENIREQT QKMEHTVDRI LHMAALQSGR LHIKKEWVPL EDLLVTARDQ VKAVCADRPF
QVRISKDLPL LLVDPQLMVQ VLTNLLENAC RYSPSGRAIE LEAYANDAEI TVCVIDHGFG
VPPGREEEIF LRFSQVKPPH GLGGSGLGLA ICAAIIELHG GRIWVRNRVA VRGAVFCFTV
PREPEPPMPS DGD
|
|---|
| |