Gene AFE_2194 details

Gene Information

• Locus tag: AFE_2194
• Symbol: recQ
• ID: 7134395
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1945615
• End bp: 1947426
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643530562
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_002426593
• Protein GI: 218665854
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGATCC TCCCTACCCA GCAGCCAGTG GAAATCCTCC GCCACACCTT TGGTTACGAC 
GCCTTCCGGG TGCCTCAGGA GGAGGTAATC CAGACCCTCT TGGCAGCCCG GGATGCGCTG 
GTGCTCATGC CTACCGGGGG CGGGAAATCC CTGTGCTATC AGATTCCCGC CATCGCCATG 
GCAGGGACGG GCGTAGTCAT TTCACCACTG ATCGCGCTCA TGGAAGATCA GGTCAACGCC 
CTGCGTCAGG CGGGTGTCGC TGCCGCTGCC CTGAATTCCA GTGCCAGCCC CGCAGAATCA 
CGCGCTACCG AGGAGGCGTT GCTGCAGGGC TGCCTCGATC TGCTCTACAT CGCTCCGGAA 
CGCTTGCTGC AGGAACGCAC CCTCAATCTG CTGCAAAGGG CCACAGTCAA TCTCTTCGCT 
ATTGACGAAG CCCATTGCGT GTCCCAGTGG GGTCACGACT TCCGCCCGGA ATACCTGCAA 
TTACGAGTGC TGCATGAGCG CTTTCCGCTG GTGCCGCGCA TTGCCCTCAC GGCCACCGCC 
GACTCAAAAA CCCGCGCGGA AATCACCGAA CGGCTGACGC TACAGGAAGC CGCCGTCTTT 
ATCCGCTCCT TTGACCGACC CAACATCCGT TACCATATCA ATAGCGGTAG TCAGGGCGCA 
CGCAACGCCT TGCTGCGATT CATCCGCGAC CGCCACGCCG GAGATGCCGG CATCGTATAT 
TGCCTGTCCC GCAAGCGCGT GGAAGAAGTT GCCGAGTGGC TGCAGGGCGA AGGGCTGGAC 
GCCCTGCCCT ATCATGCCGG TTTGGGTATC GATGAGCGGC GTCGTAACCA GCAACGATTT 
CAGCAGGATG AAGGGGTGAT CATTGTCGCC ACCATAGCCT TCGGTATGGG CATCGACAAA 
CCGAATGTCC GCTTTGTAGC GCACCTGAAT CTGCCCAAGA GCATCGAGGC CTACTATCAG 
GAAACTGGAC GCGCCGGGCG CGACGGCCTG CCTGCAGAAG CCTGGATGCA TTACAGTCTT 
CGTGATGTCG TGCAATTACG GCAGATGATC CAGCAATCCG AAGCCGACCT GCCGCGCAAA 
CAGATGGAAG GACACAAGCT GGATGCTATG CTCGCGCTTT GCGAAACCAC GGACTGCCGC 
CGTCAGACCC TGCTCGGCTA CTTTGGCGAA AGCCTCTCCT CCCCCTGCGG CAATTGCGAC 
AATTGCCTGC AGCCGCCGGC CACCTGGGAT GCCACGGTGG CCGCACAGAA AGCCCTGTCT 
GCCATCCATC GCACCGGCCA GCGCTTCGGG GTACAGTATC TGGTAGACGT ATTGCTGGCT 
CGGGAAGATC CACGCATTCA GCAACAGGGG CATGACCGGC TCAGCGTGTA CGGCATTGGC 
AAAGAACTGT CTGCCAACGC GTGGCGCGCC CTGTTTCGCC ACCTCTTGCT GCGCGGACTC 
GTGGAAGTGG ATCACGACGG CCACGGTGGC ATGCGCCTCA GCCCATCCAG TCGCCCGCTC 
CTGCGCAACG AAGAAAAGCT GACCCTGCGC CAGCACGAAA GCCCGGTCCC CAGGCAACGC 
GAACAACGCC CGGAGATCGC ACCCCGCGAC ACCGCGCTCT GGGAAGCCCT GCGCCAGCAC 
CGCCGTGAAC TGGCGCAGGC CCAGGGCGTG CCGCCCTACG TCATTTTTCA CGACGCCACC 
CTCATGGAAA TGCTCCATCG ACGCCCGCGT GACCTGGAAG CACTGGCTGC GCTCCCCGGC 
ATCGGCGAGC GCAAACTGGC GGCTTACGGT ACATCTTTTC TGAAGATACT GCATCGCGAT 
CGGCCTTCCT GA 

 

Protein sequence

MPILPTQQPV EILRHTFGYD AFRVPQEEVI QTLLAARDAL VLMPTGGGKS LCYQIPAIAM 
AGTGVVISPL IALMEDQVNA LRQAGVAAAA LNSSASPAES RATEEALLQG CLDLLYIAPE 
RLLQERTLNL LQRATVNLFA IDEAHCVSQW GHDFRPEYLQ LRVLHERFPL VPRIALTATA 
DSKTRAEITE RLTLQEAAVF IRSFDRPNIR YHINSGSQGA RNALLRFIRD RHAGDAGIVY 
CLSRKRVEEV AEWLQGEGLD ALPYHAGLGI DERRRNQQRF QQDEGVIIVA TIAFGMGIDK 
PNVRFVAHLN LPKSIEAYYQ ETGRAGRDGL PAEAWMHYSL RDVVQLRQMI QQSEADLPRK 
QMEGHKLDAM LALCETTDCR RQTLLGYFGE SLSSPCGNCD NCLQPPATWD ATVAAQKALS 
AIHRTGQRFG VQYLVDVLLA REDPRIQQQG HDRLSVYGIG KELSANAWRA LFRHLLLRGL 
VEVDHDGHGG MRLSPSSRPL LRNEEKLTLR QHESPVPRQR EQRPEIAPRD TALWEALRQH 
RRELAQAQGV PPYVIFHDAT LMEMLHRRPR DLEALAALPG IGERKLAAYG TSFLKILHRD 
RPS