| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2138 |
|---|
| Symbol | |
|---|
| ID | 7135598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1890637 |
|---|
| End bp | 1892490 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643530507 |
|---|
| Product | PDZ domain protein |
|---|
| Protein accession | YP_002426538 |
|---|
| Protein GI | 218665893 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCGCCGC GTGGCGCTAG GAATGCCGCT TTGATCATTC CCCCACTGAG TTACCGGATC
AGCGCCGAGC CGCGGGCCCA TCTTTTTCGG GTAACCCTCA GTATTTCCGA GGCGGACCCG
GAAGGACAGA TCCTTGCCCT GCCCGCCTGG GTGCCCGGCA GCTACACCAT CCGCGATCTT
GCCCGCCATG TGACCCAAAT CCGCGCAGAA CGCAACGGAC AGGATATCGC CCTGCACAAA
ATCGCCAAAG ACCGCTGGCG GCTTGCGCCA GGGCATGGCC CGGTGGTCGT CCATTACGCC
GTCTACGCCT TCGACCGCTC GGTACGGACC ACATATCTGG ATGATCAGGG AGGCTTTTTC
AACGGCCCGG CCATCTACCT GCGGGTGTCC GGACAGGAGG CACAAACGCA CGCGGTCCTC
CTCGAAGGCC CCGAAGACTG GCAGGTAGGC ACCGCCCTCC CCCGCCAGAG CGGTGCGGTA
TGGAGCTGGG GCGGTTTTGA AGCCTCCGGC TTTGATGCCC TCATCGATCA TCCAGTGCTC
ATGGGGCCCC TTACCCTGCT GGATTTCGAG GTGGGAGAAC GACCTCATCA CCTGCTTATC
CAGGGCACTC ACCAGGCGGA TCTGCAACGT CTCGGTGCCG ACCTGACCCG CATCTGCGAC
TGGCAGCAGC GCTTCTGGGG GGATGCCGCC TTCACAGGGT ATCACTTTCT GTGCATGACC
AGCACCGACG GCTACGGCGG GCTGGAGCAC CGTGCGTCCA GTGCCCTCCT CTGCGCCCGG
GATGACCTGA GCGGTCGCAA CGAGGACCAT TACCGGCGTT TTCTGGGGCT GGCCAGCCAC
GAGTATTTTC ATGGCTGGCT GGTGCAGGCC ATCCGTCCCG CCGTGCTCGG CGCCAGCGCA
CTGGACCGGG AGGTACTCAC CCGCGATCTC TGGGTCTTCG AGGGTATCAC CTCCTATTAT
GACGATCTCT GCCTGCGCCG CGCCGGTCTG ACGACCCCCG CGCAATATCT GTGCGGCGTC
GGGAAGGAGC TTACCCGCCT GCTGCGCCGC CCGGGACGTT TCCTGCAAAG CGTGGCGGAA
TCCAGTGAAG ATGCCTGGAT CAGGCTCTAT CATCCCCATG TCAACAGCGC CAACTTTGAG
ATCAGCTATT ACAACAAGGG CGCCCTGCTC GCCCTCTGCC TGGACCTCAG TCTGCGCCTA
GAGAGTGCCG GGGCCCTGAG TCTGGACACG GTACTTGGGC GCCTGTGGCA GGATTACGGA
CGCACCGGCA TCCCCCTGCC CGAAGGCCAG TGTGTCGGGA TCGTCGAAGA CCTTGCCGGG
CCTGCGCTCG CCGGGCGTCT ACAGGACTGG ATCACCGCGA GGACCGACTT ACCGTTGCCG
GCGCTGCTCG CGGAAATGGG CATTGCGCTG CGCCTGCGCG CGGCCAGCGG CCCGCAGGAT
GAGGGTGGAG AGCCCGCAGA GAAAACCCTG CGTGCATGGC TTGGCGCGCA GTGGTTACCC
CATGCGCTGG GTGTCCAGTT GCGCCATGTG CAGACGGACA GCCCTGCGGA GCAGGCGGGT
CTGTCCCCGG ACGACATTCT CGTCGCCCTG GATGGCGTCC GGACTACGGC GGAACAATTG
CCGGAGCAAC TGGATGCGGT TCCGGAGGGC GCGGCGCTGC GCATTCAGTT CTTCCGTGAC
AACATCCTCC GGGAAACCCG CGTGACCCCT ACCGCACCGC CACGGGATAC GGCCTGGCTG
GAATTGCTGG AGGACGTCGA TGATGTGGTC CTCGCGCGTC GCCGCGCCTG GCTGGAGGGA
ACGGGCGCGG TCAGTGAAAC GTCCCGGTGC GCGTCCCTGC CGGACGGGGG ATAG
|
|---|
| Protein sequence | MPPRGARNAA LIIPPLSYRI SAEPRAHLFR VTLSISEADP EGQILALPAW VPGSYTIRDL
ARHVTQIRAE RNGQDIALHK IAKDRWRLAP GHGPVVVHYA VYAFDRSVRT TYLDDQGGFF
NGPAIYLRVS GQEAQTHAVL LEGPEDWQVG TALPRQSGAV WSWGGFEASG FDALIDHPVL
MGPLTLLDFE VGERPHHLLI QGTHQADLQR LGADLTRICD WQQRFWGDAA FTGYHFLCMT
STDGYGGLEH RASSALLCAR DDLSGRNEDH YRRFLGLASH EYFHGWLVQA IRPAVLGASA
LDREVLTRDL WVFEGITSYY DDLCLRRAGL TTPAQYLCGV GKELTRLLRR PGRFLQSVAE
SSEDAWIRLY HPHVNSANFE ISYYNKGALL ALCLDLSLRL ESAGALSLDT VLGRLWQDYG
RTGIPLPEGQ CVGIVEDLAG PALAGRLQDW ITARTDLPLP ALLAEMGIAL RLRAASGPQD
EGGEPAEKTL RAWLGAQWLP HALGVQLRHV QTDSPAEQAG LSPDDILVAL DGVRTTAEQL
PEQLDAVPEG AALRIQFFRD NILRETRVTP TAPPRDTAWL ELLEDVDDVV LARRRAWLEG
TGAVSETSRC ASLPDGG
|
|---|
| |