| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2045 |
|---|
| Symbol | |
|---|
| ID | 7136147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1797466 |
|---|
| End bp | 1798809 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643530416 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002426449 |
|---|
| Protein GI | 218665106 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCATC CACCATACAA GACACGACAG GATGCGGTGG CAGGGAAGGG GGCGTGGCGC
TGCCTGAGTG TCTGCCTGTT GGCCGGCACC CTGTTGTTGC CCTCTTTTCC CGTGTCGGCG
GCGGTGTTCA CCCTTGGGGA TGCCCTCCGG CGGGCCTTGG CTAACCAGGC CCTAGTGCAG
CAGGCGCAGC GCGTGGTGGC GGAGAAGGCG GCTCTGCACC GGGCCGCCCA CGCCGATCTG
CTGCCCAGCC TCTCCCTAGC GGCAGGCAGT ATCTGGACGC AGACCCGCAA CGGCCAGCCC
CTCTTCGTGT CCGCCAATGG CCCCCGAGAG GTCATCGGCC AGATCCAGCT CAATATTCCC
CTCTATGCGC CCCAGGCCTA TGCCTTGCAG ACCCTGGCCC ACGATCAGGT GGCCGTGGCC
AGGTACCAGA CGCGCCAAGC GCGCCTGCTG GTGGCGGCGC AGGTCACGGC GGCCTACTAT
CGGCTGGCCT TGTGGGAAAA CGAATTGTCC GTCTGGCGTG AGGCCCTGGG GGCGGCCCGG
GAACTCCTCA GCGCCACCCA AAAAAGTACC CAGGCTGGAA CCCGCTCCCG TCTGGACCTG
ACCCAGGCCC GCCTGACCCT GGCCGGTGTC CAGGCCGGAC TGGACCAGGC TACCCCGGAG
GCCGCGGCAG CCCGCCGCGT CCTGGCCCTG CAGACGGATT ACCCCGCCAG CGAACTGCCG
GCGTTGGTAC CCATCAGCCC GCCGGCGGGA GGCTTGCCCG GGGAAACCGT GTTGACTACC
CAGGCGACCC AGGCGCAGCC CCTCCTGCAG GTGGCGGAAG GGGAGATTCA AGCCGCACGC
ACCCTACTGC GCTATCATCA GGCCGCCCGG TTGCCGATGG TCGCTGCGCT GGGCGCCTAT
GGGGTGGACA CGGCAACGGC GCCCCGCGCC GGGCAACTGG CTTGGCAAGG AGCCGTGACC
CTGCAGATGC CCATTTTTGG CTTTGGCCGC AATCGCAACC GCATCGCCGC CGCCCAGGAG
CATCTGGCCG CCATGGAGGC GGGTAAGCGG GCGTTGCTTT TGCAGGTCCG AAGCCGTATT
GCCGCCGATT ACGGAGTGGC CCAGGCCGCC GACAACGCCC TAGGCAATGA TCGGACCATG
GCGCAAGAGG CTCAGGCGGT TTATGAAATG ACCCGCAAGG GGTATCTCGC CGGGGCGCTG
AGCGCCCTGG CGTTGCAGCA GGCCGAAAAC CACTGGGTGC AGGCACGGCT CAAGCTGGCG
GGAGCGGCCA TCCGGGCCCG TTTGGCGCGG GCGCAACTGG CCCTGGACAG CGGGATTCTG
CCGAACTCCG AGGAGCAGCC ATGA
|
|---|
| Protein sequence | MTHPPYKTRQ DAVAGKGAWR CLSVCLLAGT LLLPSFPVSA AVFTLGDALR RALANQALVQ
QAQRVVAEKA ALHRAAHADL LPSLSLAAGS IWTQTRNGQP LFVSANGPRE VIGQIQLNIP
LYAPQAYALQ TLAHDQVAVA RYQTRQARLL VAAQVTAAYY RLALWENELS VWREALGAAR
ELLSATQKST QAGTRSRLDL TQARLTLAGV QAGLDQATPE AAAARRVLAL QTDYPASELP
ALVPISPPAG GLPGETVLTT QATQAQPLLQ VAEGEIQAAR TLLRYHQAAR LPMVAALGAY
GVDTATAPRA GQLAWQGAVT LQMPIFGFGR NRNRIAAAQE HLAAMEAGKR ALLLQVRSRI
AADYGVAQAA DNALGNDRTM AQEAQAVYEM TRKGYLAGAL SALALQQAEN HWVQARLKLA
GAAIRARLAR AQLALDSGIL PNSEEQP
|
|---|
| |