Gene AFE_2040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_2040 
Symbol 
ID7134669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp1789693 
End bp1792056 
Gene Length2364 bp 
Protein Length787 aa 
Translation table11 
GC content55% 
IMG OID643530411 
ProductTonB-dependent receptor 
Protein accessionYP_002426444 
Protein GI218667490 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTAGCA ACATGAAGTT ACGTCCGGTC GTCGTTGCGC TCATGGCATC CGGAGCGCTG 
CTGTCGAGCG TGCCGGTCAT GGCCGATGGC ATCACCGCCA GTACCCAAAG CGCCGAAAAC
AGCTCGGTCG ACGTGGGTCA GGTCAATGCC GCAGCGCAGG GGACTTCTAC CCTGGGGAGC
CGTGAGGCGC AATCTCTTAG TCAAAAAACC CGTTTTGATT CCGGCCAGTC TATAAAGGTG
CTGGATAAGC ATGAGTTGGC GGCGGCAGGT CCGGTGGGCG GCAGCGCGCA GGCGTTGTCT
TACGCGCCGG GCGTCAGTGT TTCCAGTTAC GGATATACCG GTTCCACCAA GACCTCTATC
AGCGTGAACG GGATCAAGCA GGGTTGGGGC GGTTTCTCCG GTGGTCAGAT TGACAACGGC
AGCCTTTCCG TCACCTTTGA CGGTGTGCCC ATGGTGAATC CGTCCAGTGG CCTCTGGGAG
AGTCCTCAGG TGCCGCAGAA CGGCATTCTG CAGGGTATCG GCATCACCTA TGGTCCCGGT
AACCCGGTGG ATCGCTGGTA TAACAACATC GGCGGTCAGA TCGATTTTGT TCCCTTGCAG
CCCACCAATA AAGCCGGTGC TTCGATTAAA ATGAGCTACG GCAGCTACGA TGCCAAGAAT
ATCGTCTTCA ATGTGCGCAC CGGGAGCATA GACGGCTGGT CCACCATCCT CGCGGGTGGC
TCCGGTTCCA GCAATAGCTA TCGGCAAACC CCGGATGGTT TTGCCAATCC CAGTTATAAC
TACGCCTGGT TCCTGAAAAC CCGCAAGACC TTCAGCAACG GTGACTTCTC ACTGGGTGCC
TACCTGGCGA AAGGTTCTGG CTACCGGCCG GTATCCATCC CCCTCAACCC CATTGCCGGT
GTGACCATGG ATGGTACACC AAACTCGCCG CTGTATAGCC AGGCGACGTC TGGGTATTAT
TCCTCACTGC CGGAAAATGT CTGGTTCAAG CGGGACGGTA ATACCACCTG GCTGGTCTAC
AGCAAACTGA ACCTTGCGCT GGACAGCATG GTGGGTCTGC ATAACACGCT CTGGTATCGC
AACGGCCACC GCCTGCATTT CCACTACAAC AACTACGGGT TGTCCAATCC GAAGAACCTC
TATGAGTACA ATAACCCCCA TACCGATGTA TACGGCGACA AACTGTGGTT TTCAGTGGCC
TTGCCCTACA ATGACGTGGA CGTGGGTGGA TTCTTCCTGA ACAGCCGGTA TAACTCGCGG
AACGCCTTTT ACAATACCAA CCCGCCGTAC TACGGCTCGG CATCCGTGCC CAACGCGCAC
TATCGCAGCG ACTATTTCGA CCAGACCGAC CTTGCCGCGT TCATCCAGGA CCGGATCAGT
CCGATGGAAA ACCTGCATAT CACGCCGGGC GTGCGTTTCA TCAATTATCA GACGCGTTAT
ACGCCTGCCG CGCAGTCGGA TTTTGCCGCG GCTTATGCCT TGTCTCCGCA AAATAACCAA
GGTGCGCTCC CGACCGCCAG CAACAGCTTC ACCAAGGTAG AGCCCTCGGT GGATTTCAAC
TGGCAGCCCA TGAAATGGCT GGCGGTATTC GCCAGCTACG CGCAGGCGTA CAAGGAACCG
CAGGTAGGCG GCGGAGGTGG CCTGTATCAA GCCACTCCAC CGATTTATAG CCTGGAAAAA
AGTGCCGACT ACAATGCTGG CATAAAGATT CATTTCAGGG ATGCCGCTTA CCTGCATAAT
TTCTTCCTGC TGGCGAGCTT TTACCATCTG CACTATACCA ACCAATATAT TCCGTTCTAC
GATGCCAATG GCAATTATCT GGGTGATGCG AATGGCGATT CCATCTATCA AGGCGTCAAT
ATGGCATTGG AAGATGATCC GATTTACAAT CTGCATGTCT TTGCCAATCT CAATTTCGAG
AAGGCGACCT TCGCTCATTA CGTGACCGGC GGCGTCAGTT ATGACGGGCT GCCGGTATCC
AACGTGCCCA GCAGCACCTT TAATATCGGC ACTGCGTACA GTTACTATCT CTCGGGCGTG
TTGCTGGAGC CGCGGATCTG GTATCAGTAC ACCGGCGCAC AAAATATCTT CAATAACAAT
ACGACTGCCC CGAGCCAGCA GAAAATGCCG GGCTACGGGA CGGTGAATCT GGGTTTTGAC
AGCACCATTC CCACGCGTGG GAGCATTCCT GGTCTGAAAG ATGTCAAGCT GAGCGTCGAT
GTCCTCAATC TTGCAAATAA TCGTTATAAC GAGTTCCAGT ATATCACGGC TGGCGGGCTT
CTGGGTGGAA GCTCGGCCGG GCAGGTGCTG GCATTGCCTG GCGCTCCGTT GACGGTATAT
GGAAGTATTG CGGTAAACTT CTAA
 
Protein sequence
MRSNMKLRPV VVALMASGAL LSSVPVMADG ITASTQSAEN SSVDVGQVNA AAQGTSTLGS 
REAQSLSQKT RFDSGQSIKV LDKHELAAAG PVGGSAQALS YAPGVSVSSY GYTGSTKTSI
SVNGIKQGWG GFSGGQIDNG SLSVTFDGVP MVNPSSGLWE SPQVPQNGIL QGIGITYGPG
NPVDRWYNNI GGQIDFVPLQ PTNKAGASIK MSYGSYDAKN IVFNVRTGSI DGWSTILAGG
SGSSNSYRQT PDGFANPSYN YAWFLKTRKT FSNGDFSLGA YLAKGSGYRP VSIPLNPIAG
VTMDGTPNSP LYSQATSGYY SSLPENVWFK RDGNTTWLVY SKLNLALDSM VGLHNTLWYR
NGHRLHFHYN NYGLSNPKNL YEYNNPHTDV YGDKLWFSVA LPYNDVDVGG FFLNSRYNSR
NAFYNTNPPY YGSASVPNAH YRSDYFDQTD LAAFIQDRIS PMENLHITPG VRFINYQTRY
TPAAQSDFAA AYALSPQNNQ GALPTASNSF TKVEPSVDFN WQPMKWLAVF ASYAQAYKEP
QVGGGGGLYQ ATPPIYSLEK SADYNAGIKI HFRDAAYLHN FFLLASFYHL HYTNQYIPFY
DANGNYLGDA NGDSIYQGVN MALEDDPIYN LHVFANLNFE KATFAHYVTG GVSYDGLPVS
NVPSSTFNIG TAYSYYLSGV LLEPRIWYQY TGAQNIFNNN TTAPSQQKMP GYGTVNLGFD
STIPTRGSIP GLKDVKLSVD VLNLANNRYN EFQYITAGGL LGGSSAGQVL ALPGAPLTVY
GSIAVNF