| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2022 |
|---|
| Symbol | aspC |
|---|
| ID | 7135267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1768717 |
|---|
| End bp | 1769898 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643530393 |
|---|
| Product | aspartate aminotransferase |
|---|
| Protein accession | YP_002426426 |
|---|
| Protein GI | 218666556 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATATCC GTCTTTCCCG CCGCGTCAAT GCGGTGCGCC CATCCCCCAC CCTTGCGGTC
ACCGCCCGTG CCCAGCAACT GCGCCGCGAA GGAAAGGATA TCGTCAGCCT TGGTGCCGGC
GAGCCGGATT TCGACACCCC GGAGTACATC AAGGAGGCAG CCATTGCCGC CATTCGCCAG
GGCTTCACCA AATATACCGC CGTCGGCGGC ACACCGGAAC TGAAGGCCGC CATCATCGGC
AAATTCGCGC ACGACAACCA TCTGTCATAC CGCCCCGATG AAATTCTCGT TTCCGTCGGC
GGCAAGCAAA GCTTCTTCAA TCTTTGCCAG GCCCTTCTGG ATGCCGGCGA TGAGGTCATC
ATTCCCGCGC CCTACTGGGT ATCCTATCCG GACATCGTGC TTCTGGCCGA AGCGCGGCCC
GTCATCATCG ATACCGGCGC CAACCAGCGT TTCAAGATCA GTCCGGAGCA GCTGGAGGAA
GCGATCACGC CCAACACCCG CCTGCTGGTC ATCAACAGCC CCTCCAATCC CTCCGGCATG
ACCTACAGCC GCCCGGAATT GGAAGCCCTG GGTGAGGTCC TCCGCCGTTA TCCCCATATC
CTCATCGCCA GCGATGACAT GTACGAAAAA ATCCGCTTCC ACGATGAAGA GTTCGTCAAC
ATCGCCAACG CCTGCCCGGA TCTGGCTCCA CGCTGCATCG TCATGAATGG CGTGTCCAAG
GCCTATGCCA TGACCGGGTG GCGCATCGGC TACTGCGCCG GCCCCAAGAC GCTGATCACC
GCAATGAATA CCGTACAGTC CCAGAGCACC TCCAATCCCA CCTCCATCGC TCAGGTGGCC
GCCCAGGCGG CACTGGAAGG CGGCGACAGC GCCATCCACG AAATGGTGCT GGCTTTCAAG
CGGCGCCACA CGTATGTCTA CAACCGCCTG AAAGTGCTGC CCGGCGTTGC TGCCATGCCC
TCCGATGGTA CCTTTTACAG CTTTCCGGGA TTTCGCGAAG TCATGGCGGC GAAAGGCCTG
CGGGATGATC TTGCCCTGGC CGAGGCCTTG CTGGGAGCCG GAGTGGCCGT CGTACCGGGC
TCGGCCTTCG GCACTCCTGG CCACATCCGC CTGTCCTTCG CGACCAGCGA CAAGAACCTG
GAGATGGCCC TGGACCGCAT CAGCGCTTTC GTCAACGCCT GA
|
|---|
| Protein sequence | MDIRLSRRVN AVRPSPTLAV TARAQQLRRE GKDIVSLGAG EPDFDTPEYI KEAAIAAIRQ
GFTKYTAVGG TPELKAAIIG KFAHDNHLSY RPDEILVSVG GKQSFFNLCQ ALLDAGDEVI
IPAPYWVSYP DIVLLAEARP VIIDTGANQR FKISPEQLEE AITPNTRLLV INSPSNPSGM
TYSRPELEAL GEVLRRYPHI LIASDDMYEK IRFHDEEFVN IANACPDLAP RCIVMNGVSK
AYAMTGWRIG YCAGPKTLIT AMNTVQSQST SNPTSIAQVA AQAALEGGDS AIHEMVLAFK
RRHTYVYNRL KVLPGVAAMP SDGTFYSFPG FREVMAAKGL RDDLALAEAL LGAGVAVVPG
SAFGTPGHIR LSFATSDKNL EMALDRISAF VNA
|
|---|
| |