Gene AFE_1999 details

Gene Information

• Locus tag: AFE_1999
• ID: 7137100
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1754010
• End bp: 1754561
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643530371
• Product: autoinducer synthesis protein
• Protein accession: YP_002426405
• Protein GI: 218667155
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism; [T] Signal transduction mechanisms
• COG ID: [COG3916] N-acyl-L-homoserine lactone synthetase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.556283
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGTTA TAACCGGGCC AGCTGAAGTT TTACCGAATA ATCTGTATGC GAAGGTGGCC 
GGCTACCGAC ATCAAGTCTT TGTCGAGCAG CTTGGGTGGG CATTGCACAC GGAGAACGGG 
ATGGAGTCGG ACCAGTTCGA TCGGGCGGAC ACCGTGTACG TGGTAGCGCA AGATGACAAC 
GGCCATATAT CCGGTTGCGC TCGCCTCCTC CCCACCTCGC GCCCCTATCT GTTGGGCGAG 
ATCTTTCCCC AGTTACTCAA CGGACTGGCA CCACCATGTT CTCCCGAAGT TTGGGAACTG 
TCGCGCTTTG CGGCCGTGGA TCTGAATGGC CAAGCCAAGA TGCCAGGGCA GTTTTCATCC 
TCGGGTGCGC GAAAACTGCT GGAGGAATCC GTCGCCTGCG CCGTTTCGCA CGGGGCAAAA 
CGGCTGATCA CGGTGTCGCC GATCGGCGTG GAGCGGCTAT TGTCTCGATC TGAATATCAC 
GCACATCGAG CGGGCCCGCC GATGATCATC GGCGGGCACC CGATATTTGC ATGCTGGATA 
GATCTGGACT AA 

 

Protein sequence

MQVITGPAEV LPNNLYAKVA GYRHQVFVEQ LGWALHTENG MESDQFDRAD TVYVVAQDDN 
GHISGCARLL PTSRPYLLGE IFPQLLNGLA PPCSPEVWEL SRFAAVDLNG QAKMPGQFSS 
SGARKLLEES VACAVSHGAK RLITVSPIGV ERLLSRSEYH AHRAGPPMII GGHPIFACWI 
DLD