| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1989 |
|---|
| Symbol | leuA-2 |
|---|
| ID | 7134094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1745133 |
|---|
| End bp | 1746836 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643530362 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_002426396 |
|---|
| Protein GI | 218666956 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.07459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGACCT TCAACCACCG CCGTTACCGC GCCTTCGCGC CCGTTCACAA ACCGAACCGG
CGCTGGCCTA ACCGCCGTAT GCACCACGCG CCCGTTTGGA GCAGCGTCGA TCTGCGCGAT
GGCAATCAGG CGCTGCTCTC CCCCATGAGC GTCGAGCAAA AGCTCCGGAT GTTCGACTTG
CTCGTACGTA TGGGCTTTCG GGAGATCGAG GTCGGTTTTC CCGCCGCCTC CCAACCAGAT
TTTGACTTTG TGCGGCGCAT CATTGAAGAA GATCGTATCC CCGAGCAGGT GACCATCCAG
GTGCTCACCC AGGCGCGGGA AGCCCTGATT GACCGCACAT ACGAGGCCTT GAAAGGGGTA
CGGCGGGCGA TTGTCCATGT CTACAACTCC ACCAACCCGG CTCAGCGCGA ACAGGTGTTT
GGCCTGGATC GGGAGGGCAT CCAGGACATT GCCGTGCGAG GCGCGGAGTG GGTGAAGGAC
GGGGCCGCAC GCTGTCCAGA GACGGAATGG GTCTTTCAGT ATTCGCCGGA GAGCTTCAGC
GCCACCGAGC CGGACTACGC AGTGGAGATC TGCGAGGCAG TCAACGCGGT CTGGCGGCCC
GACCAGGGGC AGGCGGTGAT CCTCAACCTG CCTGCCACCG TCGAATCGTC CATGCCCAAT
GTCTTCGCGG ACCAGATTGA ATGGTTCTGC GACCACTTGC GCGGACGGGA GCACGTGAAA
ATCAGTGTGC ACAACCACAA TGACCGCGGT TGCGCGGTGG CGGCGGCGGA ACTGGCGGTG
TTGGCCGGCG CCGACCGGGT AGAGGGCACC CTCTTCGGCA ACGGCGAGCG GACCGGCAAC
ATGGATATCC TCACCATGGC CATGAATCTT TACTCTCAGG GCATTGATCC GCAACTGGAT
ATGTCCATGG GCACGGAAAT CGCGGAGATC TATACCACGT GTACGGGTAT GGTCGTGCCG
CCGCGTCATC CCTGGTTTGG CGAACTGGTC TACACGGCGT TTTCCGGCAG TCATCAGGAC
GCCATTCGCA AGGGCATGCA CCATCGGCGG GGACGGGAAG ATGCTGTCTG GGAGGTGCCC
TATCTGCCCA TCGATCCCGC CGATCTGGGG CGCAGGTACG AGGAGGTGGT GCGCATCAAC
AGCCAGTCCG GGAAGGGCGG TGTCGCCCAT GTGCTGGAGC GCGACCACGG TATTTCCTTG
CCGCGCTGGT TGGCGCAGGA CTTCAGCGCC GTAGTGCAGG CGACTTCCGA GCAGGAGACG
GGTGAAGTCA GCTCAGCGCA GATTTTCGCC CTGTTCGAGA GCCATTACTG CCATACCACG
GAGGATTGGC ACCTGCGACG CTACCGTCTC AGCCGGGAAG GGGAGCAGGT CGCAGGGACC
GTGGTGGTTG GCCCGGAGGC ACAGCCGCAC ATTTTACAGG GCAAGGGGAG TGGCGCCGTA
GGCGCCTTGG TCGATGCGCT GATCCAGAGT CGGGGCGTTC GTGCCGAGGT GGAACAGTTC
GACCAGCATG CCCTCGGTAG CGGCACCGGC GCCCGCGCCA TGGCCTGCGT CCGGGTCAGG
GTGGATCATG GTCAGGCGAG GTCTGCGGTG GCTTTTGGCG AGGATACCAC TGAGGCCGCT
TTGCAGGCGG TACTCAGTGC TGTTGGCCGG TCCATTGCAA AAAACGACGC ATGGAGCGCA
TCGGCAGGAC GGCAAGTGCG CTGA
|
|---|
| Protein sequence | MGTFNHRRYR AFAPVHKPNR RWPNRRMHHA PVWSSVDLRD GNQALLSPMS VEQKLRMFDL
LVRMGFREIE VGFPAASQPD FDFVRRIIEE DRIPEQVTIQ VLTQAREALI DRTYEALKGV
RRAIVHVYNS TNPAQREQVF GLDREGIQDI AVRGAEWVKD GAARCPETEW VFQYSPESFS
ATEPDYAVEI CEAVNAVWRP DQGQAVILNL PATVESSMPN VFADQIEWFC DHLRGREHVK
ISVHNHNDRG CAVAAAELAV LAGADRVEGT LFGNGERTGN MDILTMAMNL YSQGIDPQLD
MSMGTEIAEI YTTCTGMVVP PRHPWFGELV YTAFSGSHQD AIRKGMHHRR GREDAVWEVP
YLPIDPADLG RRYEEVVRIN SQSGKGGVAH VLERDHGISL PRWLAQDFSA VVQATSEQET
GEVSSAQIFA LFESHYCHTT EDWHLRRYRL SREGEQVAGT VVVGPEAQPH ILQGKGSGAV
GALVDALIQS RGVRAEVEQF DQHALGSGTG ARAMACVRVR VDHGQARSAV AFGEDTTEAA
LQAVLSAVGR SIAKNDAWSA SAGRQVR
|
|---|
| |