| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1931 |
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| Symbol | pilF |
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| ID | 7136990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1682625 |
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| End bp | 1683374 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643530304 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_002426340 |
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| Protein GI | 218666334 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0417979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGCGT ATATTGCCCA TGAACACAAG GCCAACGCTT CTGCTTCTGG CTTCAGGCCG
ACATCCGCCA ACAGCGATAA AGCCAAAGCC GGTATCTACA CGTCTCTCGG GACCGCTTAT
TTGCAGGATG GCCATCCTCG ACAGGCGATC CGGGAACTGC AATTGGCGAT TGCCGCTAAC
AGCCGTTATG CCGATGCGTA CAATGTCATG GGTCTGGCCT ACGAACAGTT GCAGCAGCGT
GATCTGGCCC GCAACGCCTT TCGCCGGGCG CTCTCCTTAG ATGCAAAAAA CCCAGAATAC
CTCAATAATT ACGGCGCATT CCTCATCAAC TCCCGTAACT ATGGCGAGGC GGTTATCGAG
CTGAAACGGG CCACGTCCGA TCCGCTATAC AGCACGCCGC AGTTCGCGTG GACCAATCTC
GCACAGGCCT ACGCAGGACT CAAGGACTTG TCGGCGGCAC GCGATGCCCT GGACCGGGCA
CTTTATCTGG TACCGAACTA TCCGCCAGCC CTGCTGATGC TTGCCGAACT GGATTACAAT
GACGGCAAAG CAGATGCCGC TTTCGCCCAT TTGCAGGTGG TTCTGGCGCA GGAGCCGGAT
AACGCTGACG CGCTCTTGCT GGCGGGGCGG ATTGCCGCCC TGCAGGGGCG GACAACACAG
GCACAGTCCC TTTGGCAGCG CTGTGTGACT GCTTCACCTT ATTCCGCAGC AGGCAAGCAG
GCGCAGCGAC TGCTGCTGCG AAACGGTTGA
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| Protein sequence | MAAYIAHEHK ANASASGFRP TSANSDKAKA GIYTSLGTAY LQDGHPRQAI RELQLAIAAN
SRYADAYNVM GLAYEQLQQR DLARNAFRRA LSLDAKNPEY LNNYGAFLIN SRNYGEAVIE
LKRATSDPLY STPQFAWTNL AQAYAGLKDL SAARDALDRA LYLVPNYPPA LLMLAELDYN
DGKADAAFAH LQVVLAQEPD NADALLLAGR IAALQGRTTQ AQSLWQRCVT ASPYSAAGKQ
AQRLLLRNG
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